IL_86124.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	break		9		10		11		12		13		14		15	1-15	2-14	3-12	3-13	4-12	5-6	6-7	6-11	7-10	8-9
1	IL_3J7P_006	3J7P	0.2978	0		5	LSU rRNA	C	81	U	82	C	83	A	84	G	85	U	86	A	87	A	88	*	U	96	G	97	A	98	A	99	C	100	A	101	G	102	cWW	ntSH	ntSH			cSH	ncWH			cWW
2	IL_3J79_004	3J79	0.2550	0		A	LSU rRNA	U	82	U	83	U	84	A	85	G	86	U	87	A	88	A	89	*	U	97	G	98	A	99	A	100	C	101	A	102	A	103	cWW	ntSH		tSW	tHH	cSH		tWH	tHS	cWW
3	IL_5AJ0_006	5AJ0	0.2743	0		A2	LSU rRNA	C	81	U	82	C	83	A	84	G	85	U	86	A	87	A	88	*	U	96	G	97	A	98	A	99	C	100	A	101	G	102	cWW			tSH	tHH	cSH		tWH	tHS	cWW
4	IL_4V8P_445	4V8P	0.2299	0		G3	5S rRNA	G	71	U	72	U	73	A	74	G	75	U	76	A	77	C	78	*	G	98	G	99	A	100	A	101	G	102	U	103	C	104	cWW				tHH	ncSH		tWH	tHS	cWW
5	IL_3J92_175	3J92	0.1939	0		7	5S rRNA	G	71	U	72	U	73	A	74	G	75	U	76	A	77	C	78	*	G	98	G	99	A	100	A	101	U	102	A	103	C	104	cWW	ntSH			tHH	cSH		tWH	tHS	cWW
6	IL_3J7Q_153	3J7Q	0.2201	0		7	5S rRNA	G	71	U	72	U	73	A	74	G	75	U	76	A	77	C	78	*	G	98	G	99	A	100	A	101	U	102	A	103	C	104	cWW	ntSH			tHH	cSH		tWH	tHS	cWW
7	IL_4IOA_007	4IOA	0.1682	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	G	215	U	216	U	217	A	218	G	219	U	220	A	221	G	222	*	C	230	G	231	A	232	A	233	C	234	C	235	C	236	cWW			tSH	tHH	cSH		tWH	tHS	cWW
8	IL_4V8P_305	4V8P	0.1798	0		F1	LSU rRNA	C	80	C	81	C	82	A	83	G	84	U	85	A	86	A	87	*	U	95	G	96	A	97	A	98	C	99	A	100	G	101	cWW	ncWW		tSH	tHH	cSH		tWH	tHS	cWW
9	IL_3J9W_071	3J9W	0.1344	0		BA	LSU rRNA	C	241	U	242	G	243	A	244	G	245	U	246	A	247	G	248	*	C	256	G	257	A	258	A	259	A	260	C	261	G	262	cWW			tSH	tHH	cSH		tWH	tHS	cWW
10	IL_1Q93_002	1Q93	0.0000	0		B	Sarcin/Ricin 28S rRNA	C	6	U	7	C	8	A	9	G	10	U	11	A	12	G	13	*	C	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW			tSH	tHH	cSH		tWH	tHS	cWW
11	IL_1JBR_002	1JBR	0.1368	0		D	31-mer SRD RNA analog	C	6	U	7	C	8	A	9	G	10	U	11	A	12	C	13	*	G	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW			tSH	tHH	cSH		tWH	tHS	cWW
12	IL_1JBR_001	1JBR	0.1541	0	8x7 Sarcin-Ricin; G-bulge	C+F	RNA (18-mer) + RNA (13-mer)	C	6	U	7	C	8	A	9	G	10	U	11	A	12	C	13	*	G	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW			tSH	tHH	cSH		tWH	tHS	cWW
13	IL_4V8P_420	4V8P	0.2221	0		F1	LSU rRNA	G	3007	U	3008	U	3009	A	3010	G	3011	U	3012	A	3013	C	3014	*	G	3019	G	3020	A	3021	A	3022	C	3023	A	3024	C	3025	cWW			ntSH	tHH			tWH	tHS	cWW
14	IL_4V88_363	4V88	0.1539	0		A5	LSU rRNA	C	3018	U	3019	U	3020	A	3021	G	3022	U	3023	A	3024	C	3025	*	G	3030	G	3031	A	3032	A	3033	C	3034	A	3035	G	3036	cWW			tSH	tHH	cSH		tWH	tHS	cWW
15	IL_4V91_126	4V91	0.1701	0		1	LSU rRNA	C	3018	U	3019	U	3020	A	3021	G	3022	U	3023	A	3024	C	3025	*	G	3030	G	3031	A	3032	A	3033	C	3034	A	3035	G	3036	cWW			tSH	ntHH	cSH		tWH	tHS	cWW
16	IL_3J7P_132	3J7P	0.1972	0		5	LSU rRNA	C	4596	U	4597	C	4598	A	4599	G	4600	U	4601	A	4602	C	4603	*	G	4608	G	4609	A	4610	A	4611	C	4612	C	4613	G	4614	cWW			tSH	tHH	cSH		ntWH	tHS	cWW
17	IL_5AN9_047	5AN9	0.2053	0		N	LSU rRNA	U	3354	U	3355	U	3356	A	3357	G	3358	U	3359	A	3360	C	3361	*	G	3366	G	3367	A	3368	A	3369	C	3370	U	3371	G	3372	cWW			tSH	tHH	cSH		tWH	tHS	cWW
18	IL_3J9W_070	3J9W	0.2156	0		BA	LSU rRNA	C	204	U	205	A	206	A	207	G	208	U	209	A	210	C	211	*	G	191	G	192	A	193	A	194	C	195	U	196	G	197	cWW	cwW		tSH	tHH	ncSH		tWH	tHS	cWW
19	IL_5J7L_250	5J7L	0.2012	0	8x7 Sarcin-Ricin; G-bulge	DA	LSU rRNA	C	201	U	202	A	203	A	204	G	205	U	206	A	207	C	208	*	G	188	G	189	A	190	A	191	C	192	U	193	G	194	cWW	cwW		tSH	tHH	cSH		tWH	tHS	cWW
20	IL_4IOA_006	4IOA	0.2022	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	C	178	U	179	C	180	A	181	G	182	U	183	A	184	C	185	*	G	165	G	166	A	167	A	168	C	169	U	170	G	171	cWW	cwW		ntSH	tHH	cSH		tWH	tHS	cWW
21	IL_5FDU_006	5FDU	0.1925	0		1A	LSU rRNA	C	190	U	191	C	192	A	193	G	194	U	195	A	196	C	197	*	G	177	G	178	A	179	A	180	C	181	U	182	G	183	cWW	cwW		tSH	tHH	cSH		tWH	tHS	cWW
22	IL_4V9F_006	4V9F	0.2149	0	8x7 Sarcin-Ricin; G-bulge	0	LSU rRNA	C	171	U	172	C	173	A	174	G	175	U	176	A	177	U	178	*	A	158	G	159	A	160	A	161	C	162	U	163	G	164	cWW	cwW		tSH	tHH	cSH		tWH	tHS	cWW
23	IL_4U4U_458	4U4U	0.2464	1		7	5S rRNA	A	72	C	74	G	75	A	76	G	77	U	78	A	79	G	80	*	C	100	G	101	A	102	A	103	A	104	C	105	U	106	cWW	cWw		tSH	tHH	cSH		tWH	tHS	cWW
24	IL_4V19_054	4V19	0.2249	0		A	LSU rRNA	C	1452	C	1453	C	1454	A	1455	G	1456	U	1457	A	1458	C	1459	*	G	1464	G	1465	A	1466	C	1467	A	1468	A	1469	G	1470	cWW	ncWW		ntSH		cSH		tWH	tHS	cWW
25	IL_3J7Y_025	3J7Y	0.1897	0		A	LSU rRNA	A	2306	U	2307	A	2308	A	2309	G	2310	U	2311	A	2312	A	2313	*	U	2674	G	2675	A	2676	A	2677	A	2678	U	2679	U	2680	cWW	cwW		tSH	tHH	cSH		tWH	tHS	cWW
26	IL_4V19_021	4V19	0.2353	0		A	LSU rRNA	A	638	U	639	G	640	A	641	G	642	U	643	A	644	A	645	*	U	1004	G	1005	A	1006	A	1007	A	1008	U	1009	U	1010	cWW	cwW		tSH	tHH	cSH		tWH	tHS	cWW
27	IL_5J7L_289	5J7L	0.2545	0	8x7 Sarcin-Ricin; G-bulge	DA	LSU rRNA	A	1262	U	1263	A	1264	A	1265	G	1266	U	1267	A	1268	A	1269	*	U	2011	G	2012	A	2013	A	2014	A	2015	U	2016	U	2017	cWW	cwW		tSH	tHH	cSH		tWH	tHS	cWW
28	IL_5FDU_050	5FDU	0.2551	0		1A	LSU rRNA	A	1308	U	1309	G	1310	A	1311	G	1312	U	1313	A	1314	A	1315	*	U	2033	G	2034	A	2035	A	2036	A	2037	U	2038	U	2039	cWW	cwW		tSH	tHH	cSH		tWH	tHS	cWW
29	IL_3J9W_113	3J9W	0.2856	0		BA	LSU rRNA	A	1302	U	1303	G	1304	A	1305	G	1306	U	1307	A	1308	G	1309	*	U	2040	G	2041	A	2042	A	2043	A	2044	U	2045	U	2046	cWW	cwW		tSH	tHH	cSH		tWH	tHS	cWW
30	IL_4IOA_047	4IOA	0.3360	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	A	1275	U	1276	G	1277	A	1278	G	1279	U	1280	A	1281	A	1282	*	U	1994	G	1995	A	1996	A	1997	A	1998	U	1999	U	2000	cWW	cwW		tSH		cSH		tWH	tHS	cWW
31	IL_5AJ0_161	5AJ0	0.3016	0		A2	LSU rRNA	C	4558	U	4559	C	4560	A	4561	G	4562	U	4563	A	4564	C	4565	*	G	4570	G	4571	A	4572	A	4573	C	4574	C	4575	G	4576	cWW			tSH	tHH			tWH	tHS	cWW
32	IL_3J7Y_058	3J7Y	0.3814	0		A	LSU rRNA	C	3119	C	3120	C	3121	U	3122	G	3123	U	3124	A	3125	C	3126	*	G	3131	G	3132	A	3133	C	3134	A	3135	A	3136	G	3137	cWW	ncWW		ntSH				ntWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCAGUAC*GGAACCG	4
AUGAGUAA*UGAAAUU	3
CUCAGUAA*UGAACAG	2
GUUAGUAC*GGAAUAC	2
CUUAGUAC*GGAACAG	2
CUAAGUAC*GGAACUG	2
CUCAGUAC*GGAACUG	2
AUAAGUAA*UGAAAUU	2
UUUAGUAA*UGAACAA	1
GUUAGUAC*GGAAGUC	1
GUUAGUAG*CGAACCC	1
CCCAGUAA*UGAACAG	1
CUGAGUAG*CGAAACG	1
CUCAGUAG*CGAACCG	1
GUUAGUAC*GGAACAC	1
UUUAGUAC*GGAACUG	1
CUCAGUAU*AGAACUG	1
ACCGAGUAG*CGAAACU	1
CCCAGUAC*GGACAAG	1
AUGAGUAG*UGAAAUU	1
CCCUGUAC*GGACAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCAGUA*GAACC	5
UUAGUA*GAACA	4
UGAGUA*GAAAU	4
UCAGUA*GAACU	3
UCAGUA*GAACA	2
UUAGUA*GAAUA	2
UAAGUA*GAACU	2
UAAGUA*GAAAU	2
UUAGUA*GAAGU	1
UUAGUA*GAACC	1
CCAGUA*GAACA	1
UGAGUA*GAAAC	1
UUAGUA*GAACU	1
CCGAGUA*GAAAC	1
CCAGUA*GACAA	1
CCUGUA*GACAA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_86124.1 Version IL_86124.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_86124.1 Version IL_86124.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json