Motif IL_87065.3 Version IL_87065.3 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_094 | 4A1B | 0.1065 | 2 | 1 | 26S RRNA | G | 2391 | A | 2393 | * | U | 2969 | A | 2970 | C | 2972 | cWW | cWW | cSH |
| 2 | IL_3U5H_097 | 3U5H | 0.0000 | 2 | 5 | 25S rRNA | G | 2396 | A | 2398 | * | U | 2981 | A | 2982 | C | 2984 | cWW | cWW | cSH |
| 3 | IL_4CUV_100 | 4CUV | 0.1166 | 2 | 1 | 25S RRNA | G | 2396 | A | 2398 | * | U | 2981 | A | 2982 | C | 2984 | cWW | cWW | cSH |
| 4 | IL_1VW3_063 | 1VW3 | 0.2719 | 2 | A | 21S ribosomal RNA | A | 1954 | G | 1956 | * | C | 2879 | A | 2881 | U | 2882 | cWW | cWW | |
| 5 | IL_2QBG_079 | 2QBG | 0.3100 | 2 | B | 23S rRNA | A | 2054 | G | 2056 | * | C | 2612 | A | 2614 | U | 2615 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAA*UACC | 3 |
| ACG*CUAU | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*AC | 3 |
| C*UA | 2 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_87065.3 | Only in the parent motif |
|---|---|---|---|
| IL_87065.2 Compare | IL_2QBG_079, IL_3U5H_097, IL_1VW3_063, IL_4A1B_094 | IL_4CUV_100 |
Children motifs
| Child motif | Common motif instances | Only in IL_87065.3 | Only in the child motif |
|---|---|---|---|
| IL_67038.1 Compare | IL_2QBG_079, IL_3U5H_097, IL_4A1B_094, IL_1VW3_063, IL_4CUV_100 | IL_1VX6_117, IL_3U5H_117, IL_2QBG_098, IL_4A1B_114, IL_4QCN_096, IL_1VX6_099, IL_1S72_087, IL_1VW3_081, IL_4CUV_121, IL_4IOA_093 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cSH-cWW
- Heat map statistics
- Min 0.11 | Avg 0.18 | Max 0.31
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