#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10 11 12 13 14 151-152-143-134-125-66-117-108-9
1 IL_3F1H_0473F1H0.33980A23S RRNAA1262U1263G1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcwWtSHtHHcSHtWHtHScWW
2 IL_3F1H_0063F1H0.27180A23S RRNAC201U202C203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcwWntSHtHHcSHtWHtHScWW
3 IL_2ZJR_0072ZJR0.215208x7 Sarcin-Ricin; G-bulge (H)X LSU rRNAG215U216U217A218G219U220A221G222*C230G231A232A233C234C235C236cWWtSHntHHcSHtWHtHScWW
4 IL_1S72_0061S720.191608x7 Sarcin-Ricin; G-bulge (H)0 LSU rRNAC171U172C173A174G175U176A177U178*A158G159A160A161C162U163G164cWWcwWtSHtHHcSHtWHtHScWW
5 IL_2ZJR_0062ZJR0.19510X LSU rRNAC178U179C180A181G182U183A184C185*G165G166A167A168C169U170G171cWWcwWncSHtHScWW
6 IL_1JBR_0011JBR0.000008x7 Sarcin-Ricin; G-bulgeC+FRNA (18-mer) + RNA (13-mer)C6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWtSHtHHcSHtWHtHScWW
7 IL_1JBR_0021JBR0.07180D31-mer SRD RNA analogC6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWtSHtHHcSHtWHtHScWW
8 IL_1Q96_0011Q960.089008x7 Sarcin-Ricin; G-bulgeAsarcin/ricin 28S rRNAC6U7C8A9G10U11A12U13*A18G19A20A21C22C23G24cWWtSHcSHtWHtHScWW
9 IL_1Q96_0031Q960.11780Csarcin/ricin 28S rRNAC6U7C8A9G10U11A12U13*A18G19A20||AA21||AC22||AC23G24cWWtSHtHHcSHtWHtHScWW
10 IL_1Q96_0021Q960.11780Bsarcin/ricin 28S rRNAC6U7C8A9G10U11A12U13*A18G19A20A21||AC22||AC23||AG24cWWtSHtHHcSHtHScWW
11 IL_2ZJR_0452ZJR0.227208x7 Sarcin-Ricin; G-bulge (H)X LSU rRNAA1275U1276G1277A1278G1279U1280A1281A1282*U1994G1995A1996A1997A1998U1999U2000cWWcwWtSHncSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUCAGUAU*AGAACCG3
AUGAGUAA*UGAAAUU2
CUCAGUAC*GGAACCG2
GGAACUG*CUCAGUAC1
GUUAGUAG*CGAACCC1
CUCAGUAU*AGAACUG1
CUCAGUAC*GGAACUG1
Non-Watson-Crick part of the motif
SequenceCounts
UCAGUA*GAACC5
UGAGUA*GAAAU2
UCAGUA*GAACU2
GAACU*UCAGUA1
UUAGUA*GAACC1

Release history

Release0.10.20.30.4
Date2011-12-082011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_87158.1Only in the child motif
IL_07547.1
Compare
IL_1Q96_003, IL_1Q96_002, IL_1Q96_001, IL_2ZJR_007, IL_1JBR_001, IL_1JBR_002IL_2ZJR_045, IL_3F1H_006, IL_1S72_006, IL_2ZJR_006, IL_3F1H_047
IL_55276.1
Compare
IL_1S72_006, IL_2ZJR_006IL_2ZJR_045, IL_3F1H_006, IL_1JBR_002, IL_1Q96_003, IL_1Q96_002, IL_1Q96_001, IL_2ZJR_007, IL_1JBR_001, IL_3F1H_047IL_3PYO_045, IL_2QBG_011, IL_2QBG_048, IL_3PYO_006
IL_40287.1
Compare
IL_2ZJR_045IL_3F1H_006, IL_1JBR_002, IL_1Q96_003, IL_1Q96_002, IL_1Q96_001, IL_1S72_006, IL_1JBR_001, IL_2ZJR_006, IL_3F1H_047, IL_2ZJR_007
Annotations
  • (6)
  • 8x7 Sarcin-Ricin; G-bulge (H) (3)
  • 8x7 Sarcin-Ricin; G-bulge (2)
  • Basepair signature
    Heat map statistics
    Min 0.07 | Avg 0.20 | Max 0.39
    Help

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