Motif IL_87158.1 Version IL_87158.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-13 | 4-12 | 5-6 | 6-11 | 7-10 | 8-9 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3F1H_047 | 3F1H | 0.3398 | 0 | A | 23S RRNA | A | 1262 | U | 1263 | G | 1264 | A | 1265 | G | 1266 | U | 1267 | A | 1268 | A | 1269 | * | U | 2011 | G | 2012 | A | 2013 | A | 2014 | A | 2015 | U | 2016 | U | 2017 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWW | |
2 | IL_3F1H_006 | 3F1H | 0.2718 | 0 | A | 23S RRNA | C | 201 | U | 202 | C | 203 | A | 204 | G | 205 | U | 206 | A | 207 | C | 208 | * | G | 188 | G | 189 | A | 190 | A | 191 | C | 192 | U | 193 | G | 194 | cWW | cwW | ntSH | tHH | cSH | tWH | tHS | cWW | |
3 | IL_2ZJR_007 | 2ZJR | 0.2152 | 0 | 8x7 Sarcin-Ricin; G-bulge (H) | X | LSU rRNA | G | 215 | U | 216 | U | 217 | A | 218 | G | 219 | U | 220 | A | 221 | G | 222 | * | C | 230 | G | 231 | A | 232 | A | 233 | C | 234 | C | 235 | C | 236 | cWW | tSH | ntHH | cSH | tWH | tHS | cWW | |
4 | IL_1S72_006 | 1S72 | 0.1916 | 0 | 8x7 Sarcin-Ricin; G-bulge (H) | 0 | LSU rRNA | C | 171 | U | 172 | C | 173 | A | 174 | G | 175 | U | 176 | A | 177 | U | 178 | * | A | 158 | G | 159 | A | 160 | A | 161 | C | 162 | U | 163 | G | 164 | cWW | cwW | tSH | tHH | cSH | tWH | tHS | cWW |
5 | IL_2ZJR_006 | 2ZJR | 0.1951 | 0 | X | LSU rRNA | C | 178 | U | 179 | C | 180 | A | 181 | G | 182 | U | 183 | A | 184 | C | 185 | * | G | 165 | G | 166 | A | 167 | A | 168 | C | 169 | U | 170 | G | 171 | cWW | cwW | ncSH | tHS | cWW | ||||
6 | IL_1JBR_001 | 1JBR | 0.0000 | 0 | 8x7 Sarcin-Ricin; G-bulge | C+F | RNA (18-mer) + RNA (13-mer) | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | C | 13 | * | G | 18 | G | 19 | A | 20 | A | 21 | C | 22 | C | 23 | G | 24 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
7 | IL_1JBR_002 | 1JBR | 0.0718 | 0 | D | 31-mer SRD RNA analog | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | C | 13 | * | G | 18 | G | 19 | A | 20 | A | 21 | C | 22 | C | 23 | G | 24 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | ||
8 | IL_1Q96_001 | 1Q96 | 0.0890 | 0 | 8x7 Sarcin-Ricin; G-bulge | A | sarcin/ricin 28S rRNA | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | U | 13 | * | A | 18 | G | 19 | A | 20 | A | 21 | C | 22 | C | 23 | G | 24 | cWW | tSH | cSH | tWH | tHS | cWW | ||
9 | IL_1Q96_003 | 1Q96 | 0.1178 | 0 | C | sarcin/ricin 28S rRNA | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | U | 13 | * | A | 18 | G | 19 | A | 20||A | A | 21||A | C | 22||A | C | 23 | G | 24 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | ||
10 | IL_1Q96_002 | 1Q96 | 0.1178 | 0 | B | sarcin/ricin 28S rRNA | C | 6 | U | 7 | C | 8 | A | 9 | G | 10 | U | 11 | A | 12 | U | 13 | * | A | 18 | G | 19 | A | 20 | A | 21||A | C | 22||A | C | 23||A | G | 24 | cWW | tSH | tHH | cSH | tHS | cWW | |||
11 | IL_2ZJR_045 | 2ZJR | 0.2272 | 0 | 8x7 Sarcin-Ricin; G-bulge (H) | X | LSU rRNA | A | 1275 | U | 1276 | G | 1277 | A | 1278 | G | 1279 | U | 1280 | A | 1281 | A | 1282 | * | U | 1994 | G | 1995 | A | 1996 | A | 1997 | A | 1998 | U | 1999 | U | 2000 | cWW | cwW | tSH | ncSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUCAGUAU*AGAACCG | 3 |
AUGAGUAA*UGAAAUU | 2 |
CUCAGUAC*GGAACCG | 2 |
GGAACUG*CUCAGUAC | 1 |
GUUAGUAG*CGAACCC | 1 |
CUCAGUAU*AGAACUG | 1 |
CUCAGUAC*GGAACUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UCAGUA*GAACC | 5 |
UGAGUA*GAAAU | 2 |
UCAGUA*GAACU | 2 |
GAACU*UCAGUA | 1 |
UUAGUA*GAACC | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_87158.1 | Only in the child motif |
---|---|---|---|
IL_07547.1 Compare | IL_1Q96_003, IL_1Q96_002, IL_1Q96_001, IL_2ZJR_007, IL_1JBR_001, IL_1JBR_002 | IL_2ZJR_045, IL_3F1H_006, IL_1S72_006, IL_2ZJR_006, IL_3F1H_047 | |
IL_55276.1 Compare | IL_1S72_006, IL_2ZJR_006 | IL_2ZJR_045, IL_3F1H_006, IL_1JBR_002, IL_1Q96_003, IL_1Q96_002, IL_1Q96_001, IL_2ZJR_007, IL_1JBR_001, IL_3F1H_047 | IL_3PYO_045, IL_2QBG_011, IL_2QBG_048, IL_3PYO_006 |
IL_40287.1 Compare | IL_2ZJR_045 | IL_3F1H_006, IL_1JBR_002, IL_1Q96_003, IL_1Q96_002, IL_1Q96_001, IL_1S72_006, IL_1JBR_001, IL_2ZJR_006, IL_3F1H_047, IL_2ZJR_007 |
- Annotations
-
- (6)
- 8x7 Sarcin-Ricin; G-bulge (H) (3)
- 8x7 Sarcin-Ricin; G-bulge (2)
- Basepair signature
- Heat map statistics
- Min 0.07 | Avg 0.20 | Max 0.39
Coloring options: