Motif IL_87218.1 Version IL_87218.1 of this group appears in releases 1.0 to 1.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-5	3-4
1	IL_4A1B_069	4A1B	0.7240	0		1	LSU rRNA	G	1643	A	1644	C	1645	*	G	1849	C	1850	cWW	cWW
2	IL_1FJG_012	1FJG	0.3920	1		A	SSU rRNA	U	249	A	250	U	252	*	A	274	G	275	cWW	cWW
3	IL_3U5F_020	3U5F	0.0000	3		6	SSU rRNA	U	318	U	319	A	323	*	U	345	G	346	cWW	cWW
4	IL_2ZJR_023	2ZJR	0.7084	0	90 degree turn (H)	X	LSU rRNA	U	942	U	943	A	944	*	U	860	G	861	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAC*GC	1
UAGU*AG	1
UUUCGA*UG	1
UUA*UG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	1
AG*	1
UUCG*	1
U*	1

Release history

Release	1.0
Date	2013-03-04
Status	> 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_87218.1	Only in the parent motif
IL_10005.1 Compare	IL_4A1B_069, IL_1FJG_012	IL_2ZJR_023, IL_3U5F_020	IL_2XZM_053, IL_1S72_017
IL_16252.2 Compare	IL_2ZJR_023	IL_3U5F_020, IL_1FJG_012, IL_4A1B_069	IL_3U5F_054, IL_2XZM_050
IL_53423.1 Compare	IL_3U5F_020	IL_2ZJR_023, IL_4A1B_069, IL_1FJG_012

Children motifs

Child motif	Common motif instances	Only in IL_87218.1	Only in the child motif
IL_80348.1 Compare	IL_3U5F_020, IL_1FJG_012	IL_2ZJR_023, IL_4A1B_069	IL_4IOA_023
IL_16166.3 Compare	IL_4A1B_069	IL_2ZJR_023, IL_3U5F_020, IL_1FJG_012	IL_1U6B_010, IL_4FNJ_004, IL_1NTB_001

Annotations: (3)
90 degree turn (H) (1)
Basepair signature: cWW-L-cWW
Heat map statistics: Min 0.39 | Avg 0.54 | Max 0.92

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Coloring options: Nucleotide numbers

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