Motif IL_88017.1 Version IL_88017.1 of this group appears in releases 3.95 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 1-9 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6DVK_003 | 6DVK | 0.9215 | 0 | H | RNA (95-MER) | G | 28 | A | 29 | A | 30 | C | 31 | U | 32 | A | 33 | C | 34 | * | G | 61 | C | 62 | cWW | cWW |
| 2 | IL_2PN3_002 | 2PN3 | 0.6375 | 0 | A+B | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
| 3 | IL_7JRT_008 | 7JRT | 0.3686 | 0 | B | RNA nano bracelet | G | 91 | A | 92 | A | 93 | C | 94 | U | 95 | A | 96 | C | 97 | * | G | 117 | C | 118 | cWW | cWW |
| 4 | IL_3P59_001 | 3P59 | 0.1221 | 0 | A+B | RNA (15-mer) + RNA (10-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
| 5 | IL_7JRT_002 | 7JRT | 0.0000 | 0 | A | RNA nano bracelet | G | 24 | A | 25 | A | 26 | C | 27 | U | 28 | A | 29 | C | 30 | * | G | 50 | C | 51 | cWW | cWW |
| 6 | IL_7JRT_006 | 7JRT | 0.1047 | 0 | B | RNA nano bracelet | G | 24 | A | 25 | A | 26 | C | 27 | U | 28 | A | 29 | C | 30 | * | G | 50 | C | 51 | cWW | cWW |
| 7 | IL_7JRT_004 | 7JRT | 0.1492 | 0 | A | RNA nano bracelet | G | 91 | A | 92 | A | 93 | C | 94 | U | 95 | A | 96 | C | 97 | * | G | 117 | C | 118 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAACUAC*GC | 7 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACUA* | 7 |
- Annotations
-
- (7)
- Basepair signature
- cWW-L-cWW-L-L-R-L
- Heat map statistics
- Min 0.10 | Avg 0.43 | Max 0.93
Coloring options: