Motif IL_89002.4 Version IL_89002.4 of this group appears in releases 3.89 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9	1-9	2-8	3-7	4-7	5-6
1	IL_7A0S_051	7A0S	0.4951	1	UAA/GAN	X	LSU rRNA	C	1593	U	1594	A	1595	A	1596	A	1597	*	U	1431	G	1432	A	1433	G	1435		ntWH			cWW
2	IL_8C3A_051	8C3A	0.1922	1	UAA/GAN	1	LSU rRNA	U	1163	U	1164	A	1165	A	1166	A	1167	*	U	1324	U	1325	A	1326	A	1328	cWW	tWH	ntHW		cWW
3	IL_5TBW_048	5TBW	0.1887	1	UAA/GAN	1	LSU rRNA	U	1167	U	1168	A	1169	A	1170	G	1171	*	C	1328	U	1329	A	1330	A	1332	cWW	tWH	ntHW		cWW
4	IL_8C3A_129	8C3A	0.1550	1	UAA/GAN	1	LSU rRNA	A	3075	U	3076	U	3077	A	3078	U	3079	*	A	3099	G	3100	A	3101	U	3103	cWW	tWH		tHS	cWW
5	IL_5TBW_120	5TBW	0.1668	1	UAA/GAN	1	LSU rRNA	A	3103	U	3104	U	3105	A	3106	U	3107	*	A	3127	G	3128	A	3129	U	3131	cWW	tWH		tHS	cWW
6	IL_4V9F_037	4V9F	0.1118	1	UAA/GAN	0	LSU rRNA	U	1095	U	1096	A	1097	A	1098	G	1099	*	C	1257	G	1258	A	1259	A	1261	cWW	tWH		tHS	cWW
7	IL_8VTW_035	8VTW	0.0690	1	UAA/GAN	1A	LSU rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
8	IL_4WF9_036	4WF9	0.0560	1	UAA/GAN	X	LSU rRNA	C	1042	U	1043	A	1044	A	1045	G	1046	*	C	1197	G	1198	A	1199	G	1201	cWW	tWH		tHS	cWW
9	IL_5J7L_277	5J7L	0.0000	1	UAA/GAN	DA	LSU rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
10	IL_7A0S_033	7A0S	0.0817	1	UAA/GAN	X	LSU rRNA	C	1009	U	1010	A	1011	A	1012	G	1013	*	C	1164	G	1165	A	1166	G	1168	cWW	tWH		tHS	cWW
11	IL_5J7L_295	5J7L	0.1738	1	UAA/GAN	DA	LSU rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		tHS	cWW
12	IL_8VTW_054	8VTW	0.1717	1	UAA/GAN	1A	LSU rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		tHS	cWW
13	IL_8VTW_051	8VTW	0.1863	1	UAA/GAN	1A	LSU rRNA	C	1351	U	1352	A	1353	A	1354	G	1355	*	C	1376	G	1377	A	1378	G	1380	cWW	tWH		tHS	cWW
14	IL_8C3A_067	8C3A	0.2932	2	UAA/GAN	1	LSU rRNA	C	1528	U	1529	A	1530	A	1531	G	1532	*	C	1581	G	1582	A	1583	G	1586	cWW	tWH		tHS	cWW
15	IL_5TBW_063	5TBW	0.3012	2	UAA/GAN	1	LSU rRNA	C	1532	U	1533	A	1534	A	1535	G	1536	*	C	1585	G	1586	A	1587	G	1590	cWW	tWH		tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAAG*CGAAG	6
AUUAU*AGAAU	2
CUAAG*CGAAAG	2
CUAAA*UGAUG	1
UUAAA*UUAUA	1
UUAAG*CUAUA	1
UUAAG*CGAGA	1
CUAAG*CGAUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*GAA	6
UAA*GAU	2
UAA*UAU	2
UUA*GAA	2
UAA*GAAA	2
UAA*GAG	1

Release history

Release	3.89	3.90
Date	2024-10-09	2024-11-06
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: UAA/GAN (15)
Basepair signature: cWW-tWH-cWW-L-cWW-tHS
Heat map statistics: Min 0.06 | Avg 0.23 | Max 0.58

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Coloring options: Nucleotide numbers

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