Motif IL_89088.1 Version IL_89088.1 of this group appears in releases 0.7 to 0.12
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_045 | 1S72 | 0.2123 | 2 | 0 | LSU rRNA | G | 1269 | U | 1270 | * | A | 1286 | C | 1289 | cWW | cWW | |
| 2 | IL_4A1B_032 | 4A1B | 0.0000 | 1 | 1 | 26S RRNA | A | 779 | C | 780 | * | G | 800 | U | 802 | cWW | cWW | |
| 3 | IL_2QBG_032 | 2QBG | 0.3542 | 1 | B | 23S rRNA | G | 862 | A | 863 | * | U | 913 | C | 915 | cWW | cWW | |
| 4 | IL_1KXK_001 | 1KXK | 0.5397 | 2 | A | ai5g group II Self-splicing intron | G | 61 | G | 62 | * | U | 8 | C | 11 | cWW | cWW | |
| 5 | IL_3U5H_063 | 3U5H | 0.8763 | 1 | 5 | 25S rRNA | C | 1420 | G | 1421 | * | C | 1385 | G | 1387 | cWW | cWW | |
| 6 | IL_1KXK_003 | 1KXK | 0.9432 | 2 | Multiple bulged bases | A | ai5g group II Self-splicing intron | U | 28 | G | 29 | * | C | 42 | G | 45 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GU*AAUC | 1 |
| AC*GUU | 1 |
| GA*UGC | 1 |
| GG*UAUC | 1 |
| CG*CAG | 1 |
| UG*CACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AU | 2 |
| *U | 1 |
| *G | 1 |
| *A | 1 |
| *AC | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 |
|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_89088.1 | Only in the parent motif |
|---|---|---|---|
| IL_32390.1 Compare | IL_1KXK_003, IL_1S72_045, IL_3U5H_063 | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_2QBG_086, IL_2NZ4_007, IL_2NZ4_004, IL_2XZM_033, IL_1S72_042, IL_2ZJR_024, IL_4A1B_063, IL_3UXR_107, IL_3U5H_137, IL_3U5F_033, IL_1FJG_022, IL_1S72_022, IL_1FJG_005, IL_2AW7_029, IL_3G78_015, IL_3U5H_019, IL_2AW7_005, IL_1S72_099, IL_2QBG_060 |
| IL_29610.1 Compare | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_1KXK_003, IL_1S72_045, IL_3U5H_063 | IL_2OZB_001, IL_2XZM_066, IL_3U5H_046 |
Children motifs
| Child motif | Common motif instances | Only in IL_89088.1 | Only in the child motif |
|---|---|---|---|
| IL_25300.1 Compare | IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_1KXK_003, IL_1S72_045, IL_3U5H_063 | IL_2OZB_001, IL_3U5H_046 |
| IL_91487.1 Compare | IL_1S72_045, IL_3U5H_063 | IL_1KXK_003, IL_1KXK_001, IL_4A1B_032, IL_2QBG_032 | IL_2QBG_086, IL_2NZ4_007, IL_2XZM_033, IL_1S72_042, IL_2ZJR_024, IL_1FJG_005, IL_2QBG_060, IL_3U5F_033, IL_1FJG_022, IL_1S72_022, IL_4A1B_063, IL_2AW7_029, IL_3V2F_107, IL_1S72_099, IL_3U5H_137, IL_4FAW_014, IL_2AW7_005, IL_3V2F_059, IL_3U5H_019 |
| IL_71565.2 Compare | IL_1KXK_003 | IL_1S72_045, IL_4A1B_032, IL_1KXK_001, IL_2QBG_032, IL_3U5H_063 | IL_3U5F_086, IL_3V2F_082, IL_1S72_093 |
- Annotations
-
- Multiple bulged bases (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.21 | Avg 0.56 | Max 0.99
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