#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2break 3 41-42-3
1 IL_2BQ5_0012BQ50.62601RRNA (19-mer)G5||||P_1G7||||P_1*C14||||P_1C15||||P_1cWWcWW
2 IL_3D0U_0013D0U0.61151Single bulged CALysine riboswitchG9G11*C75C76cWWcWW
3 IL_1R3E_0011R3E0.31903Multiple bulged basesD+ERNA (17-mer)G408G412*C415C416cWWcWW
4 IL_3F1H_0773F1H0.42021A LSU rRNAG2067G2069*C2442C2443cWWcWW
5 IL_1S72_0301S720.30911Single bulged U (H)0 LSU rRNAG834G836*C847C848cWWcWW
6 IL_3DIR_0013DIR0.26111ALysine riboswitchG12G14*C78C79cWWcWW
7 IL_1S72_0931S720.31413Bulged stacked bases (H)0 LSU rRNAA2746G2750*U2732U2733cWWcWW
8 IL_1R3E_0021R3E0.27103Multiple bulged basesE+DRNA (17-mer)G408G412*C415C416cWWcWW
9 IL_3G78_0153G780.19462AGroup II catalytic intron D1-D4-3U375G378*U365A366cWWcWW
10 IL_2IPY_0062IPY0.18351D IREG18U20*A13C14cWWcWW
11 IL_1I9X_0011I9X0.21041Single bulged AB+ARNA (13-mer)U9A10*U4A6cWWcWW
12 IL_2BQ5_0022BQ50.22481SRNA (19-mer)G5||||P_1G7||||P_1*C14||||P_1C15||||P_1cWWncWW
13 IL_2ZJR_0342ZJR0.22801X LSU rRNAA1022G1024*C1160U1161cWWcWW
14 IL_2C4Z_0012C4Z0.16861RRNA (19-mer)G5||||P_1G7||||P_1*C14||||P_1C15||||P_1cWWcWW
15 IL_2ZJR_0152ZJR0.20931X LSU rRNAG776G778*C710C711cWWcWW
16 IL_397D_001397D0.17673Multiple bulged basesA+BRNA (15-mer) + RNA (12-mer)A22G26*C39U40cWWcWW
17 IL_2IPY_0032IPY0.18691C IREG18U20*A13C14cWWcWW
18 IL_2IZ9_0012IZ90.16601RRNA (18-mer)G5||||P_1G7||||P_1*C14||||P_1C15||||P_1cWWcWW
19 IL_2VPL_0052VPL0.17951DFRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITEG28A30*U16C17cWWcWW
20 IL_2IZM_0012IZM0.15591RRNA (19-mer)G5||||P_1G7||||P_1*C14||||P_1C15||||P_1cWWcWW
21 IL_6MSF_0016MSF0.17951Single bulged ARRNA (14-mer)G12||||P_1G13||||P_1*C2||||P_1C4||||P_1cWWcWW
22 IL_2ZJR_0762ZJR0.14561Single bulged U (H)X LSU rRNAG2050G2052*C2421C2422cWWcWW
23 IL_2IZN_0012IZN0.13231Single bulged GRRNA (19-mer)G14||||P_1G15||||P_1*C5||||P_1C7||||P_1cWWcWW
24 IL_1S03_0051S030.14321Single bulged UB47-MERA6G8*C41U42cWWcWW
25 IL_2BU1_0022BU10.00001SRNA (19-mer)G5||||P_1G7||||P_1*C14||||P_1C15||||P_1cWWcWW
26 IL_2IZN_0022IZN0.11321SRNA (19-mer)G14||||P_1G15||||P_1*C5||||P_1C7||||P_1cWWcWW
27 IL_2ZJR_0912ZJR0.20572X LSU rRNAC2550G2553*C2491G2492cWWcWW
28 IL_3F1H_0183F1H0.19591A LSU rRNAG763G765*C697C698cWWcWW
29 IL_3F1H_0953F1H0.17222A LSU rRNAC2571G2574*C2512G2513cWWcWW
30 IL_1S72_0741S720.13241Single bulged U (H)0 LSU rRNAA2108G2110*C2477U2478cWWcWW
31 IL_1S03_0011S030.19741Single bulged UA47-MERA6G8*C41U42cWWcWW
32 IL_3OWZ_0013OWZ0.23681AGlycine riboswitchG12A14*U27C28cWWcWW
33 IL_1S72_0861S720.237220 LSU rRNAG2606G2609*C2547C2548cWWcWW
34 IL_2NOK_0062NOK0.30111D+CRNA (20-mer)G105G107*U61C62cWWcWW
35 IL_1FJG_0141FJG0.25981Single bulged U (H)A SSU rRNAG392A393*U367C369cWWcWW
36 IL_2IZ9_0022IZ90.31891SRNA (18-mer)G5||||P_1G7||||P_1*C14||||P_1C15||||P_1cWWcWW
37 IL_2IZM_0022IZM0.35241SRNA (19-mer)G5||||P_1G7||||P_1*C14||||P_1C15||||P_1cWWncWW
38 IL_1S72_0401S720.400310 LSU rRNAG1108G1110*C1253C1254cWWcWW
39 IL_2NOK_0032NOK0.54101B+ARNA (20-mer)G105G107*U61C62cWWcWW
40 IL_1FJG_0431FJG0.59891A SSU rRNAC1195G1197*C1060G1061cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAG*CC8
GCG*CC4
GUG*CC4
AUG*CU4
GUUCG*CC2
GUU*AC2
GAA*UC2
GG*CGC2
CACG*CG2
GUG*UC2
ACGUG*UU1
UACG*UA1
UA*UAA1
AUCUG*CU1
GG*CAC1
GUCG*CC1
GA*UUC1
CUG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
U*13
A*10
C*4
AC*3
UUC*2
*A2
*G2
CGU*1
UCU*1
UC*1
*U1

Release history

Release0.4
Date2011-12-08
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_89429.1Only in the parent motif
IL_43856.1
Compare
IL_2NOK_006, IL_2BQ5_001, IL_1I9X_001, IL_2NOK_003, IL_2BU1_002, IL_397D_001, IL_1FJG_043, IL_1S72_040, IL_2VPL_005, IL_3D0U_001, IL_3F1H_077, IL_2IZN_002, IL_2IZN_001, IL_2IZM_001, IL_2IZM_002, IL_1S72_093, IL_3G78_015, IL_2C4Z_001, IL_3DIR_001, IL_1S72_074, IL_1S03_001, IL_1S03_005, IL_1R3E_001, IL_1R3E_002, IL_2ZJR_091, IL_6MSF_001, IL_2IZ9_001, IL_2IZ9_002, IL_2ZJR_076IL_2BQ5_002, IL_2IPY_003, IL_3F1H_095, IL_2IPY_006, IL_3F1H_018, IL_2ZJR_034, IL_1S72_030, IL_2ZJR_015, IL_1FJG_014, IL_3OWZ_001, IL_1S72_086IL_1I9X_002, IL_2OZB_001, IL_2BU1_001, IL_1FJG_001, IL_2C50_002, IL_2C50_001, IL_2PLY_002, IL_2PLY_001, IL_1S72_022, IL_2IPY_001, IL_1DQH_001, IL_2IPY_004, IL_1S03_006, IL_3F1H_098, IL_1JZV_005, IL_2C4Z_002, IL_1S72_077, IL_1FJG_036, IL_1GID_002, IL_3F1H_034, IL_1S03_002, IL_1S72_104, IL_3F1H_103, IL_2ZJR_098
IL_40289.1
Compare
IL_2BQ5_002, IL_3F1H_095, IL_3F1H_018, IL_2ZJR_034, IL_1S72_030, IL_2ZJR_015, IL_1FJG_014, IL_3OWZ_001, IL_1S72_086IL_2NOK_006, IL_2BQ5_001, IL_1I9X_001, IL_2NOK_003, IL_2IZM_001, IL_2BU1_002, IL_397D_001, IL_1FJG_043, IL_1S72_040, IL_2VPL_005, IL_3D0U_001, IL_3F1H_077, IL_2IZN_002, IL_2IZN_001, IL_2IPY_003, IL_2IZM_002, IL_2IPY_006, IL_1S72_093, IL_3G78_015, IL_2C4Z_001, IL_3DIR_001, IL_1S72_074, IL_1S03_001, IL_1S03_005, IL_1R3E_001, IL_1R3E_002, IL_2ZJR_091, IL_6MSF_001, IL_2IZ9_001, IL_2IZ9_002, IL_2ZJR_076IL_2ZJR_056, IL_2IPY_002, IL_1S72_014, IL_2ZJR_011, IL_2ZJR_016, IL_1DUQ_002, IL_1DUQ_004, IL_1FJG_002, IL_1DUQ_006, IL_1FJG_040, IL_1DUQ_008, IL_1GID_012, IL_3D2V_004, IL_3D2V_001, IL_3F1H_019, IL_2GIS_001, IL_1S72_002, IL_1S72_027, IL_1S72_026, IL_2VPL_002, IL_1U9S_001, IL_2ZJR_068, IL_2ZJR_065, IL_1S72_099, IL_2OIU_003, IL_3F1H_105, IL_2OIU_001, IL_3F1H_073, IL_2ZJR_024, IL_1CSL_002, IL_2ZJR_002, IL_1GID_009, IL_2PJP_001, IL_2IPY_005, IL_1S72_070, IL_3F1H_037, IL_3F1H_066, IL_3F1H_002, IL_3OWZ_005, IL_3F1H_046, IL_2ZJR_072, IL_3HHN_003
IL_79986.1
Compare
IL_2IPY_003, IL_2IPY_006IL_2BQ5_002, IL_2NOK_006, IL_2BQ5_001, IL_1I9X_001, IL_2NOK_003, IL_2BU1_002, IL_2ZJR_034, IL_2IZM_002, IL_2ZJR_015, IL_1S72_086, IL_397D_001, IL_1FJG_043, IL_1S72_040, IL_2VPL_005, IL_3D0U_001, IL_3F1H_077, IL_2IZN_002, IL_2IZN_001, IL_2IZM_001, IL_3F1H_095, IL_1S72_030, IL_1FJG_014, IL_3G78_015, IL_2C4Z_001, IL_3DIR_001, IL_1S72_074, IL_1S03_001, IL_1S03_005, IL_3F1H_018, IL_1R3E_001, IL_1R3E_002, IL_2ZJR_091, IL_1S72_093, IL_3OWZ_001, IL_6MSF_001, IL_2IZ9_001, IL_2IZ9_002, IL_2ZJR_076IL_2PN4_008, IL_3F1H_087, IL_1ET4_004, IL_2QUX_002, IL_2PN4_003, IL_2ZJR_031, IL_1FJG_005, IL_1FJG_007, IL_1MJI_001, IL_1MJI_003, IL_3G78_004, IL_1S72_088, IL_1S72_064, IL_1S72_067, IL_1S72_045, IL_3F1H_032, IL_1S72_042, IL_3MEI_001, IL_1U9S_006, IL_3D0U_005, IL_1U9S_003, IL_1ET4_008, IL_3F1H_059, IL_2NZ4_007, IL_2NZ4_004, IL_1KXK_003, IL_1KXK_001, IL_1FJG_035, IL_2QUX_004, IL_1FJG_016, IL_2QUX_006, IL_1JZV_002, IL_2QUX_001, IL_1S72_096, IL_2QUX_003, IL_1GID_005, IL_1ET4_002, IL_3DIR_005, IL_1FUF_002, IL_1FUF_003, IL_2QUX_005, IL_1S72_010, IL_3MUR_003, IL_3MUR_004, IL_2ZJR_093, IL_1F7Y_002, IL_3B31_001, IL_3HHN_001, IL_2ZY6_002

Children motifs

Child motifCommon motif instancesOnly in IL_89429.1Only in the child motif
IL_61133.1
Compare
IL_2BQ5_002, IL_2NOK_006, IL_2BQ5_001, IL_1I9X_001, IL_2NOK_003, IL_2BU1_002, IL_2ZJR_034, IL_2ZJR_015, IL_1S72_086, IL_1FJG_043, IL_1S72_040, IL_2VPL_005, IL_3D0U_001, IL_2IZN_002, IL_2IZN_001, IL_2IZM_001, IL_2IZM_002, IL_1S03_001, IL_1FJG_014, IL_3G78_015, IL_2C4Z_001, IL_3DIR_001, IL_1S72_074, IL_1S72_030, IL_1S03_005, IL_1R3E_001, IL_1R3E_002, IL_3OWZ_001, IL_6MSF_001, IL_2IZ9_001, IL_2IZ9_002, IL_2ZJR_076IL_2IPY_003, IL_3F1H_095, IL_2IPY_006, IL_3F1H_018, IL_2ZJR_091, IL_3F1H_077, IL_1S72_093, IL_397D_001IL_2PN4_008, IL_1ET4_008, IL_2ZJR_011, IL_2PN4_003, IL_2ZJR_016, IL_2AW7_051, IL_3O30_065, IL_3O58_066, IL_1XOK_002, IL_1ET4_010, IL_3O58_142, IL_2C50_002, IL_3O30_068, IL_3O58_068, IL_2XZM_030, IL_3D2V_004, IL_3D2V_001, IL_1S72_042, IL_2QBG_023, IL_2QUX_001, IL_3O30_026, IL_1GID_002, IL_2ZJR_068, IL_2XXA_003, IL_2ZJR_065, IL_2XXA_005, IL_2IPY_002, IL_1CSL_002, IL_2QBG_099, IL_2ZJR_002, IL_3O30_071, IL_3O58_074, IL_3O58_076, IL_1GID_009, IL_1ET4_006, IL_3B31_001, IL_1ET4_002, IL_2AW7_026, IL_1XOK_001, IL_2XZM_009, IL_2ZJR_093, IL_3PYO_018, IL_2XXA_010, IL_2XXA_012, IL_2AW7_017, IL_3PYO_088, IL_2QBG_080, IL_1I9X_002, IL_3G78_004, IL_2ZJR_031, IL_2QBG_089, IL_3O58_160, IL_1FJG_040, IL_2XZM_013, IL_1S72_064, IL_1S72_067, IL_2AW7_019, IL_2PLY_002, IL_1U9S_008, IL_1U9S_006, IL_1U9S_003, IL_1U9S_001, IL_3Q1Q_004, IL_3IWN_004, IL_3IWN_003, IL_3PYO_034, IL_3PYO_037, IL_3PYO_032, IL_2OIU_003, IL_2OIU_001, IL_3O58_057, IL_3PYO_095, IL_3O30_010, IL_3O58_051, IL_1GID_005, IL_2C4Z_002, IL_2XZM_068, IL_2AW7_005, IL_2PJP_001, IL_2XZM_065, IL_1MFQ_005, IL_2AW7_002, IL_2QBG_073, IL_2QBG_070, IL_3OWZ_005, IL_2QBG_060, IL_3PYO_002, IL_3D0U_005, IL_3PYO_008, IL_3O58_112, IL_2ZJR_056, IL_3PYO_061, IL_3O30_022, IL_3O30_024, IL_3PYO_064, IL_2BU1_001, IL_1DUQ_002, IL_3O58_100, IL_1DUQ_004, IL_1DUQ_006, IL_2XZM_074, IL_1DUQ_008, IL_1S72_088, IL_2QBG_107, IL_2QBG_069, IL_2QBG_104, IL_2GIS_001, IL_1S72_002, IL_3DHS_003, IL_3IVK_001, IL_3IVK_003, IL_2A64_002, IL_2NZ4_007, IL_3PYO_072, IL_1U63_004, IL_1U63_002, IL_1KXK_003, IL_1X8W_001, IL_3O58_133, IL_2QBG_035, IL_3O58_137, IL_1FJG_016, IL_1S72_096, IL_1S72_099, IL_3O58_046, IL_3DIR_005, IL_1S03_002, IL_1S03_006, IL_2XZM_057, IL_1S72_010, IL_3MUR_003, IL_1S72_014, IL_3MUR_004, IL_2A64_003, IL_3PYO_019, IL_2ZY6_002, IL_3PYO_044, IL_3O58_087, IL_1ET4_004, IL_3O58_121, IL_2XZM_056, IL_1FJG_005, IL_1FJG_007, IL_2AW7_001, IL_1FJG_001, IL_1FJG_002, IL_2QBG_007, IL_387D_001, IL_1S72_077, IL_2PLY_001, IL_3MEI_001, IL_1S72_027, IL_1S72_026, IL_2VPL_002, IL_1S72_022, IL_3PYO_078, IL_3P49_003, IL_1GID_012, IL_2XZM_021, IL_2AW7_048, IL_1DQH_001, IL_2AW7_043, IL_2AW7_042, IL_1FJG_035, IL_1FJG_036, IL_2QUX_004, IL_2QUX_005, IL_2QUX_006, IL_1JZV_002, IL_1JZV_005, IL_3O58_017, IL_2QUX_002, IL_2QUX_003, IL_2IPY_005, IL_2XZM_023, IL_1FUF_002, IL_1FUF_003, IL_1S72_104, IL_2XZM_024, IL_2AW7_008, IL_2XZM_029, IL_2QBG_038, IL_1NBS_009, IL_1F7Y_002, IL_2C50_001, IL_1NBS_001, IL_1NBS_002, IL_3DHS_002, IL_1NBS_005
IL_49994.1
Compare
IL_397D_001, IL_2IPY_003, IL_2ZJR_091, IL_2IPY_006IL_2BQ5_002, IL_2NOK_006, IL_2BQ5_001, IL_1I9X_001, IL_2NOK_003, IL_2BU1_002, IL_2ZJR_034, IL_2IZM_002, IL_2ZJR_015, IL_1S72_086, IL_1FJG_043, IL_1S72_040, IL_2VPL_005, IL_3D0U_001, IL_3F1H_077, IL_2IZN_002, IL_2IZN_001, IL_2IZM_001, IL_3F1H_095, IL_1S03_001, IL_1S72_093, IL_3G78_015, IL_2C4Z_001, IL_3DIR_001, IL_1S72_074, IL_1S72_030, IL_1S03_005, IL_3F1H_018, IL_1R3E_001, IL_1R3E_002, IL_1FJG_014, IL_3OWZ_001, IL_6MSF_001, IL_2IZ9_001, IL_2IZ9_002, IL_2ZJR_076IL_2QBG_097, IL_2QBG_022, IL_3O58_043, IL_3PYO_068, IL_2QBG_076, IL_3PYO_086, IL_1MJI_001, IL_1MJI_003, IL_2ZJR_072, IL_3O58_108, IL_1S72_070
IL_50767.1
Compare
IL_1S72_093IL_2BQ5_002, IL_2NOK_006, IL_2BQ5_001, IL_1I9X_001, IL_2NOK_003, IL_2IZM_001, IL_2BU1_002, IL_2ZJR_034, IL_2IZM_002, IL_2ZJR_015, IL_1S72_086, IL_397D_001, IL_1FJG_043, IL_1S72_040, IL_2VPL_005, IL_3D0U_001, IL_3F1H_077, IL_2IZN_002, IL_2IZN_001, IL_2IPY_003, IL_3F1H_095, IL_2IPY_006, IL_1S03_001, IL_1FJG_014, IL_3G78_015, IL_2C4Z_001, IL_3DIR_001, IL_1S72_074, IL_1S72_030, IL_1S03_005, IL_3F1H_018, IL_1R3E_001, IL_1R3E_002, IL_2ZJR_091, IL_3OWZ_001, IL_6MSF_001, IL_2IZ9_001, IL_2IZ9_002, IL_2ZJR_076
Annotations
  • (26)
  • Single bulged U (H) (4)
  • Multiple bulged bases (3)
  • Single bulged A (2)
  • Single bulged U (2)
  • Bulged stacked bases (H) (1)
  • Single bulged G (1)
  • Single bulged C (1)
  • Basepair signature
    Heat map statistics
    Min 0.05 | Avg 0.33 | Max 0.94
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