IL_89505.2

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-3	1-5	3-4
1	IL_7A0S_079	7A0S	1.3868	Single bulged U	X	LSU rRNA	U	2197	U	2198	C	2199	*	G	2186	A	2187		cWW	cWW
2	IL_1S03_005	1S03	1.1889	Single bulged U	B	47-MER	A	6	U	7	G	8	*	C	41	U	42		cWW	cWW
3	IL_1S03_001	1S03	1.1790	Single bulged U	A	47-MER	A	6	U	7	G	8	*	C	41	U	42		cWW	cWW
4	IL_4C7O_001	4C7O	0.8842	Single bulged U	E	SRP RNA	G	38	U	39	A	40	*	U	7	C	8		cWW	cWW
5	IL_2UWM_003	2UWM	0.8137	Single bulged U	D	RNA (23-mer)	C	25	U	26	G	27	*	C	21	G	22		cWW	cWW
6	IL_3W3S_002	3W3S	1.0428	Single bulged U	B	Selenocysteine transfer RNA	G	43	U	43\|\|\|A	G	44	*	C	26	C	27		cWW	cWW
7	IL_4KZD_001	4KZD	1.0156	Single bulged U	R	RNA (84-MER)	C	74	U	75	G	76	*	C	10	G	11		cWW	cWW
8	IL_1GID_012	1GID	0.9977	Single bulged U	B	P4-P6 RNA RIBOZYME DOMAIN	G	129	U	130	U	131	*	A	192	C	193		cWW	cWW
9	IL_4WF9_088	4WF9	0.9073	Single bulged U	X	LSU rRNA	U	2428	U	2429	C	2430	*	G	2441	G	2442		cWW	cWW
10	IL_3KTW_010	3KTW	0.9008	Single bulged U	C	SRP RNA	U	178	U	179	C	180	*	G	152	G	153	ncSH	cWW	ncWW
11	IL_8K85_005	8K85	1.0496		B+A	RNA (56-MER)	U	30	U	31	G	32	*	C	20	G	21		cWW	cWW
12	IL_5J7L_334	5J7L	0.8751	Single bulged U	DA	LSU rRNA	U	2401	U	2402	C	2403	*	G	2414	G	2415		cWW	cWW
13	IL_6MWN_006	6MWN	0.6710	Single bulged U	B	IRES	U	659	U	660	C	661	*	G	646	A	647		cWW	cWW
14	IL_8P9A_314	8P9A	0.7043	Single bulged U	AR	LSU rRNA	C	2204	U	2205	G	2206	*	C	2237	G	2238		cWW	cWW
15	IL_8P9A_253	8P9A	0.7788	Single bulged U	AR	LSU rRNA	A	775	U	776	U	777	*	A	755	U	756		cWW	cWW
16	IL_8K85_008	8K85	0.6993		A+B	RNA (56-MER)	U	30	U	31	G	32	*	C	20	G	21		cWW	cWW
17	IL_8P9A_358	8P9A	0.7090	Single bulged U	AR	LSU rRNA	U	3381	U	3382	G	3383	*	C	3324	G	3325		cWW	cWW
18	IL_7KKV_001	7KKV	0.6666	Single bulged U	B	OLE* RNA	U	497	U	498	U	499	*	A	506	G	507		cWW	cWW
19	IL_2R8S_004	2R8S	0.5943	Single bulged U	R	P4-P6 RNA RIBOZYME DOMAIN	G	129	U	130	U	131	*	A	192	C	193		cWW	cWW
20	IL_8TQX_002	8TQX	0.7855	Single bulged U	A+D	Zika virus stem-loop A (SLA) bottom stem	G	14	U	15	A	16	*	U	4	C	5		cWW	cWW
21	IL_2ZY6_002	2ZY6	0.8400	Single bulged U	A	phenylalanyl transfer RNA	G	10	U	11	G	12	*	C	24	C	25		cWW	cWW
22	IL_4WF9_030	4WF9	0.7160	Single bulged U	X	LSU rRNA	A	969	U	970	U	971	*	A	897	U	898		cWW	cWW
23	IL_4O26_001	4O26	0.5852	Single bulged U	E	Telomerase TR	G	181	U	182	C	183	*	G	193	C	194		cWW	cWW
24	IL_2A64_003	2A64	0.5835	Single bulged U	A	ribonuclease P RNA	G	66	U	67	G	68	*	C	77	C	78		cWW	cWW
25	IL_6JQ6_006	6JQ6	0.5827	Single bulged U	U	RNA (81-MER)	A	38	U	39	C	40	*	G	55	U	56		cWW	cWW
26	IL_5J7L_331	5J7L	0.6057	Single bulged U	DA	LSU rRNA	U	2202	U	2203	G	2204	*	U	2220	G	2221		cWW	cWW
27	IL_8TQX_001	8TQX	0.4923	Single bulged U	D+A	Zika virus stem-loop A (SLA) bottom stem	G	14	U	15	A	16	*	U	4	C	5		cWW	cWW
28	IL_3CUL_007	3CUL	0.6119	Single bulged U	C	RNA (92-MER)	U	17	U	18	C	19	*	GTP	1	G	2		cWW	cWW
29	IL_8P9A_361	8P9A	0.5570	Single bulged U	AR	LSU rRNA	G	3340	U	3341	A	3342	*	U	3363	C	3364		cWW	cWW
30	IL_3WBM_001	3WBM	0.5203	Single bulged U	X+Y	RNA (25-MER)	G	2	U	3	A	4	*	U	23	C	24		cWW	cWW
31	IL_7KVT_002	7KVT	0.3694	Single bulged U	B	Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions	G	50	U	51	A	52	*	U	66	C	67		cWW	cWW
32	IL_3TZR_002	3TZR	0.5067	Single bulged U	B+A	RNA (16-mer)	G	105	U	106	G	107	*	U	61	C	62		cWW	cWW
33	IL_8P9A_232	8P9A	0.4245	Single bulged U	AR+AT	LSU rRNA + 5.8S rRNA	A	13	U	14	C	15	*	G	144	U	145		cWW	cWW
34	IL_3NDB_005	3NDB	0.5503	Single bulged U	M	SRP RNA	C	139	U	140	C	141	*	G	237	G	238		cWW	cWW
35	IL_8C3A_415	8C3A	0.3710	Single bulged U	CM	SSU rRNA	U	437	U	438	A	439	*	U	461	A	462		cWW	cWW
36	IL_8P9A_396	8P9A	0.3591	Single bulged U	sR	SSU rRNA	U	439	U	440	A	441	*	U	463	A	464		cWW	cWW
37	IL_5J7L_017	5J7L	0.3559	Single bulged U	AA	SSU rRNA	U	367	U	368	G	369	*	C	392	A	393		cWW	cWW
38	IL_6CZR_126	6CZR	0.4005	Single bulged U	1a	SSU rRNA	U	363	U	364	C	365	*	G	388	A	389		cWW	cWW
39	IL_2OIU_003	2OIU	0.4404	Single bulged U	Q	L1 Ribozyme RNA Ligase	G	18	U	19	U	20	*	A	41	C	42		cWW	cWW
40	IL_4LFB_014	4LFB	0.3829	Single bulged U	A	SSU rRNA	U	367	U	368	C	369	*	G	392	A	393		cWW	cWW
41	IL_3D2V_001	3D2V	0.3913	Single bulged U	A	TPP riboswitch (THI element)	G	73	U	74	G	75	*	C	5	C	6		cWW	cWW
42	IL_2PJP_001	2PJP	0.4684	Single bulged U	B	SECIS RNA	G	16	U	17	U	18	*	A	29	C	30		cWW	cWW
43	IL_8P9A_321	8P9A	0.3302	Single bulged U	AR	LSU rRNA	G	2409	U	2410	U	2411	*	A	2811	C	2812		cWW	cWW
44	IL_4V9F_074	4V9F	0.4332	Single bulged U	0	LSU rRNA	A	2108	U	2109	G	2110	*	C	2477	U	2478		cWW	cWW
45	IL_4WF9_080	4WF9	0.4065	Single bulged U	X	LSU rRNA	G	2094	U	2095	G	2096	*	C	2469	C	2470		cWW	cWW
46	IL_7A0S_075	7A0S	0.3947	Single bulged U	X	LSU rRNA	G	2050	U	2051	G	2052	*	C	2421	C	2422		cWW	cWW
47	IL_5J7L_388	5J7L	0.3948	Single bulged U	DA	LSU rRNA	G	2067	U	2068	G7M	2069	*	C	2442	C	2443		cWW	cWW
48	IL_9DFE_080	9DFE	0.3324	Single bulged U	1A	LSU rRNA	G	2067	U	2068	G	2069	*	C	2442	C	2443		cWW	cWW
49	IL_8P9A_427	8P9A	0.3812	Single bulged U	sR	SSU rRNA	G	1051	U	1052	G	1053	*	C	1066	C	1067		cWW	cWW
50	IL_4FRG_002	4FRG	0.4935	Single bulged U	B	cobalamin riboswitch aptamer domain	G	23	U	24	G	25	*	C	39	C	40		cWW	cWW
51	IL_8F5G_001	8F5G	0.4706	Single bulged U	D	RNA	A	5	U	6	C	7	*	G	21	U	22		cWW	cWW
52	IL_8P9A_372	8P9A	0.3086	Single bulged U	AT	5.8S rRNA	A	89	U	90	C	91	*	G	68	U	69		cWW	cWW
53	IL_6LT7_001	6LT7	0.3292	Single bulged U	C	50-mer RNA	G	46	U	47	U	48	*	A	41	C	42		cWW	cWW
54	IL_2A64_002	2A64	0.3943	Single bulged U	A	ribonuclease P RNA	G	51	U	52	C	53	*	G	395	C	396		cWW	cWW
55	IL_8P9A_403	8P9A	0.2514	Single bulged U	sR	SSU rRNA	G	557	U	558	C	559	*	G	586	C	587		cWW	cWW
56	IL_8C3A_424	8C3A	0.0000	Single bulged U	CM	SSU rRNA	G	555	U	556	C	557	*	G	584	C	585		cWW	cWW
57	IL_4V9F_039	4V9F	0.3890	Single bulged U	0	LSU rRNA	G	1108	U	1109	G	1110	*	C	1253	C	1254		cWW	cWW
58	IL_9DFE_037	9DFE	0.3829	Single bulged U	1A	LSU rRNA	G	1011	U	1012	C	1013	*	G	1149	C	1150		cWW	cWW
59	IL_4WF9_038	4WF9	0.4622	Single bulged U	X	LSU rRNA	A	1055	U	1056	A	1057	*	U	1193	U	1194		cWW	cWW
60	IL_5J7L_279	5J7L	0.4087	Single bulged U	DA	LSU rRNA	G	1011	U	1012	C	1013	*	G	1149	C	1150		cWW	cWW
61	IL_8P9A_278	8P9A	0.5283	Single bulged U	AR	LSU rRNA	A	1180	U	1181	A	1182	*	U	1324	U	1325		cWW	cWW
62	IL_7A0S_035	7A0S	0.5910	Single bulged U	X	LSU rRNA	A	1022	U	1023	G	1024	*	C	1160	U	1161		cWW	cWW
63	IL_3SNP_004	3SNP	0.6191	Single bulged U	D	ferritin H IRE RNA	G	18	U	19	U	20	*	A	13	C	14		cWW	cWW
64	IL_5J7L_298	5J7L	0.4931	Single bulged U	DA	LSU rRNA	G	1459	U	1460	C	1461	*	G	1450	C	1451		cWW	cWW
65	IL_8P9A_357	8P9A	0.4930	Single bulged U	AR	LSU rRNA	G	3318	U	3319	A	3320	*	U	3387	C	3388		cWW	cWW
66	IL_8VMB_001	8VMB	0.5615	Single bulged U	R	RNA (83-MER)	G	40	U	41	G	42	*	C	36	C	37		cWW	cWW
67	IL_8VMA_002	8VMA	0.7182	Single bulged U	C	RNA (88-MER)	G	40	U	41	G	42	*	C	36	C	37		cWW	cWW
68	IL_8C3A_476	8C3A	0.6227	Single bulged U	CM	SSU rRNA	U	1643	U	1644	G	1645	*	U	1730	A	1731		cWW	cWW
69	IL_8P9A_458	8P9A	0.6074	Single bulged U	sR	SSU rRNA	U	1656	U	1657	G	1658	*	U	1743	A	1744		cWW	cWW
70	IL_6CZR_156	6CZR	0.5065	Single bulged U	1a	SSU rRNA	C	1177	U	1178	G	1179	*	C	1043	G	1044		cWW	cWW
71	IL_4LFB_046	4LFB	0.5086	Single bulged U	A	SSU rRNA	C	1195	U	1196	G	1197	*	C	1060	G	1061		cWW	cWW
72	IL_7PMM_002	7PMM	0.7146	Single bulged U	D	RNA (45mer) containing HP92 of the 23S rRNA	A	15	U	16	A	17	*	U	31	U	32		cWW	cWW
73	IL_7PMQ_002	7PMQ	0.5667	Single bulged U	F	RNA (42-MER)	A	24	U	25	A	26	*	U	40	U	41		cWW	cWW
74	IL_8P9A_281	8P9A	0.3785	Single bulged U	AR	LSU rRNA	G	1207	U	1208	G	1209	*	C	1296	C	1297		cWW	cWW
75	IL_7VTI_004	7VTI	0.4061	Single bulged U	B	crRNA	G	21	U	22	G	23	*	C	14	C	15		cWW	cWW
76	IL_3MEI_001	3MEI	0.4018	Single bulged U	B+A	RNA (23-mer)	C	15	U	16	G	17	*	C	7	G	8		cWW	cWW
77	IL_8C3A_455	8C3A	0.4917	Single bulged U	CM	SSU rRNA	G	1253	U	1254	G	1255	*	C	1426	C	1427		cWW	cWW
78	IL_8P9A_437	8P9A	0.4879	Single bulged U	sR	SSU rRNA	G	1268	U	1269	G	1270	*	C	1440	C	1441		cWW	cWW
79	IL_4V9F_107	4V9F	0.4433	Single bulged U	9	5S rRNA	G	86	U	87	G	88	*	C	95	C	96		cWW	cWW
80	IL_5J7L_046	5J7L	0.4909	Single bulged U	AA	SSU rRNA	G	1048	U	1049	G	1050	*	C	1208	C	1209		cWW	cWW
81	IL_4LFB_042	4LFB	0.5307	Single bulged U	A	SSU rRNA	G	1048	U	1049	G	1050	*	C	1208	C	1209		cWW	cWW
82	IL_2PN3_003	2PN3	0.5142	Single bulged U	B+A	RNA (20-mer)	G	105	U	106	G	107	*	U	61	C	62		cWW	cWW
83	IL_4V9F_013	4V9F	0.5854	Single bulged U	0	LSU rRNA	G	307	U	308	C	309	*	G	322	C	323		cWW	cWW
84	IL_8P9A_241	8P9A	0.6338	Single bulged U	AR	LSU rRNA	G	189	U	190	U	191	*	A	204	C	205		cWW	cWW
85	IL_4V9F_029	4V9F	0.6257	Single bulged U	0	LSU rRNA	G	834	U	835	G	836	*	C	847	C	848		cWW	cWW
86	IL_8P9A_260	8P9A	0.6562	Single bulged U	AR	LSU rRNA	C	873	U	874	G	875	*	C	886	G	887		cWW	cWW
87	IL_8P9A_390	8P9A	0.9989	Single bulged U	sR	SSU rRNA	G	279	U	280	G	281	*	C	275	C	276		cWW	cWW
88	IL_5VW1_002	5VW1	0.7521	Single bulged U	C	sgRNA	G	58	U	59	C	60	*	G	54	C	55		cWW	cWW
89	IL_4ZT0_004	4ZT0	0.7303	Single bulged U	D	single-guide RNA	G	58	U	59	C	60	*	G	54	C	55		cWW	cWW
90	IL_8C3A_409	8C3A	0.9582	Single bulged U	CM	SSU rRNA	G	277	U	278	G	279	*	C	273	C	274		cWW	cWW
91	IL_1ET4_002	1ET4	1.0256	Major groove intercalation	A	RNA APTAMER, 35-MER	G	226	U	227	G	228	*	C	218	C	219		cWW	cWW
92	IL_3IWN_003	3IWN	1.4698	Major groove intercalation	A	C-di-GMP riboswitch	C	42	U	43	C	44	*	G	81	G	82		cWW	cWW
93	IL_3MXH_003	3MXH	1.4726	Major groove intercalation	R	c-di-GMP riboswitch	C	52	U	53	C	54	*	G	86	G	87		cWW	cWW
94	IL_5LYS_008	5LYS	1.2526	Single bulged U	B	7SK RNA	C	62	U	63	G	64	*	C	45	G	46		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUG*CC	23
GUC*GC	10
CUG*CG	8
GUU*AC	8
GUA*UC	7
UUC*GA	4
AUG*CU	4
AUC*GU	4
AUA*UU	4
UUC*GG	3
UUG*CG	3
CUC*GG	3
AUU*AU	2
GUG*UC	2
UUA*UA	2
UUG*UA	2
UUU*AG	1
UUG*UG	1
UUC*(GTP)G	1
UUG*CA	1
GU(G7M)*CC	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*	94

Release history

Release	3.94
Date	2025-02-26
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_89505.2 Version IL_89505.2 of this group appears in releases 3.94 to 3.94 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_89505.2 Version IL_89505.2 of this group appears in releases 3.94 to 3.94

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