Motif IL_89984.2 Version IL_89984.2 of this group appears in releases 3.94 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2OEU_002 | 2OEU | 0.3064 | 1 | A+B | Hammerhead Ribozyme + RNA (20-mer) | G | 5 | U | 6 | A | 7 | U | 9 | * | A | 12 | U | 13 | C | 14 | cWW | cWW |
| 2 | IL_8SYK_001 | 8SYK | 0.0000 | 1 | A | RNA device 43 truncation mutant 3 (U100C) | G | 12 | U | 13 | A | 14 | A | 16 | * | U | 109 | U | 110 | C | 111 | cWW | cWW |
| 3 | IL_6DCC_001 | 6DCC | 0.6408 | 1 | B | human 7SK RNA stem-loop 1 proximal methylated | C | 102 | C | 103 | G | 104 | U | 106 | * | A | 3 | U | 4 | G | 5 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUACU*AUC | 1 |
| GUACA*UUC | 1 |
| CCGCU*AUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAC*U | 2 |
| CGC*U | 1 |
Release history
| Release | 3.94 |
|---|---|
| Date | 2025-02-26 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.31 | Avg 0.36 | Max 0.69
Coloring options: