Motif IL_90133.5 Version IL_90133.5 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-7 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4N0T_004 | 4N0T | 0.5672 | 0 | B | U6 snRNA | G | 78 | A | 79 | U | 80 | G | 81 | * | C | 66 | C | 67 | C | 68 | cWW | ncWW | cWW | cWW | |
| 2 | IL_3U5F_028 | 3U5F | 0.4247 | 0 | 6 | 18S rRNA | U | 533 | A | 534 | A | 535 | C | 536 | * | G | 516 | U | 517 | A | 518 | cWW | tHS | ncWW | cWW | |
| 3 | IL_4CUX_005 | 4CUX | 0.0000 | 0 | 2 | 18S RRNA | C | 50 | A | 51 | U | 52 | G | 53 | * | C | 427 | A | 428 | G | 429 | cWW | ncWW | |||
| 4 | IL_2AW7_006 | 2AW7 | 0.3597 | 0 | A | 16S ribosomal RNA | C | 99 | G | 100 | A | 101 | G | 102 | * | C | 67 | G | 68 | G | 69 | cWW | tHS | cWW | cWW | |
| 5 | IL_3U5F_068 | 3U5F | 0.5515 | 3 | 6 | 18S rRNA | U | 1430 | G | 1433 | U | 1434 | A | 1436 | * | U | 1276 | G | 1277 | G | 1278 | cWW | tHS | ncWWa | cWW | |
| 6 | IL_4BPP_066 | 4BPP | 0.5790 | 3 | A | 18S RRNA | U | 1401 | G | 1404 | U | 1405 | A | 1407 | * | U | 1248 | G | 1249 | G | 1250 | cWW | tHS | ncBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUGUGA*UGG | 2 |
| GAUG*CCC | 1 |
| UAAC*GUA | 1 |
| CAUG*CAG | 1 |
| CGAG*CGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGUG*G | 2 |
| AU*C | 1 |
| AA*U | 1 |
| AU*A | 1 |
| GA*G | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_90133.5 | Only in the parent motif |
|---|---|---|---|
| IL_90133.4 Compare | IL_4BPP_066, IL_2AW7_006, IL_3U5F_028, IL_3U5F_068 | IL_4CUX_005, IL_4N0T_004 | IL_3BNL_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_90133.5 | Only in the child motif |
|---|---|---|---|
| IL_12849.1 Compare | IL_4CUX_005, IL_4BPP_066, IL_3U5F_028, IL_2AW7_006, IL_3U5F_068 | IL_4N0T_004 | IL_3J7A_058, IL_1VX2_063, IL_3BNL_003 |
| IL_51342.1 Compare | IL_4N0T_004 | IL_4CUX_005, IL_4BPP_066, IL_3U5F_028, IL_2AW7_006, IL_3U5F_068 | IL_4CUV_040, IL_2FQN_002, IL_4QIK_001, IL_1VX2_082, IL_1VX2_016, IL_1VW3_022, IL_4A1B_070 |
- Annotations
-
- (6)
- Basepair signature
- cWW-tHS-cWW-cWW
- Heat map statistics
- Min 0.12 | Avg 0.46 | Max 0.89
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