Motif IL_90170.1 Version IL_90170.1 of this group appears in releases 3.90 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_466 | 4V88 | 0.8980 | 0 | Non canonical cWW and near pair | A6 | SSU rRNA | A | 1753 | A | 1754 | A | 1755 | A | 1756||A | G | 1757 | * | C | 1644 | G | 1645 | C | 1646 | U | 1647 | cWW | ntWW | ncWW | cWW |
| 2 | IL_1U6B_004 | 1U6B | 0.7596 | 0 | B | 197-MER | C | 96 | A | 97 | A | 98 | G | 99 | C | 100 | * | G | 119 | A | 120 | A | 121 | G | 122 | cWW | cWW | cWW | ||
| 3 | IL_4PHY_006 | 4PHY | 0.0000 | 2 | A+B | RNA (26-MER) + RNA (20-mer) | G | 17 | A | 18 | U | 19 | C | 20 | C | 22 | * | G | 30 | G | 31 | A | 33 | C | 34 | cWW | cWw | ncWW | cWW | |
| 4 | IL_8C3A_102 | 8C3A | 0.5740 | 1 | 1 | LSU rRNA | C | 2422 | A | 2423 | U | 2424 | G | 2425 | G | 2426 | * | U | 2477 | A | 2478 | U | 2479 | G | 2481 | cWW | cWW | |||
| 5 | IL_8C3A_009 | 8C3A | 0.7018 | 0 | 1 | LSU rRNA | G | 161 | U | 162 | A | 163 | U | 164 | C | 165 | * | G | 256 | U | 257 | U | 258 | C | 259 | cWW | cwW | ncWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAG*CGCU | 1 |
| CAAGC*GAAG | 1 |
| GAUCAC*GGAAC | 1 |
| CAUGG*UAUAG | 1 |
| GUAUC*GUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GC | 1 |
| AAG*AA | 1 |
| AUCA*GAA | 1 |
| AUG*AUA | 1 |
| UAU*UU | 1 |
Release history
| Release | 3.90 |
|---|---|
| Date | 2024-11-06 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Non canonical cWW and near pair (1)
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Heat map statistics
- Min 0.57 | Avg 0.62 | Max 0.97
Coloring options: