Motif IL_90351.1 Version IL_90351.1 of this group appears in releases 3.95 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-2 | 1-7 | 2-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_364 | 5J7L | 0.3168 | 0 | AA | SSU rRNA | G | 1491 | A | 1492 | A | 1493 | G | 1494 | * | 5MC | 1407 | A | 1408 | C | 1409 | cWW | cWW | ||||
| 2 | IL_2QEK_002 | 2QEK | 0.0000 | 0 | B+A | HIV-1 subtype F DIS genomic RNA | G | 7 | A | 8 | A | 9 | G | 10 | * | C | 15 | A | 16 | C | 17 | cWW | cWW | ||||
| 3 | IL_8CRE_092 | 8CRE | 0.4932 | 1 | 1 | LSU rRNA | G | 2184 | A | 2186 | U | 2187 | G | 2188 | * | C | 2213 | G | 2214 | C | 2215 | tSW | cWW | cWW | |||
| 4 | IL_9DFE_030 | 9DFE | 0.6529 | 0 | 1A | LSU rRNA | A | 899 | A | 900 | A | 901 | C | 902 | * | G | 875 | C | 876 | U | 877 | cWW | tHS | cWW | cWW | ||
| 5 | IL_8P9A_400 | 8P9A | 0.5886 | 0 | sR | SSU rRNA | U | 533 | A | 534 | A | 535 | C | 536 | * | G | 516 | U | 517 | A | 518 | cWW | tHS | cWW | |||
| 6 | IL_5J7L_006 | 5J7L | 0.4790 | 0 | Minor groove platform with extra cWW | AA | SSU rRNA | C | 99 | G | 100 | A | 101 | G | 102 | * | C | 67 | G | 68 | G | 69 | cWW | tHS | cWW | cWW | |
| 7 | IL_4WF9_003 | 4WF9 | 0.5567 | 0 | Minor groove platform with extra cWW | X | LSU rRNA | U | 480 | C | 481 | U | 482 | C | 483 | * | G | 42 | A | 43 | A | 44 | cSH | cWW | cWW | ||
| 8 | IL_3MXH_001 | 3MXH | 0.7269 | 1 | Minor groove platform with extra cWW | R | c-di-GMP riboswitch | G | 94 | A | 95 | G | 97 | G | 98 | * | C | 11 | A | 12 | C | 13 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*(5MC)AC | 1 |
| GAAG*CAC | 1 |
| GAAUG*CGC | 1 |
| AAAC*GCU | 1 |
| UAAC*GUA | 1 |
| CGAG*CGG | 1 |
| UCUC*GAA | 1 |
| GAUGG*CAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*A | 2 |
| AAU*G | 1 |
| AA*C | 1 |
| AA*U | 1 |
| GA*G | 1 |
| CU*A | 1 |
| AUG*A | 1 |
- Annotations
-
- (5)
- Minor groove platform with extra cWW (3)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.32 | Avg 0.53 | Max 0.88
Coloring options: