Motif IL_90721.1 Version IL_90721.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J7P_018 | 3J7P | 0.6916 | 1 | 5 | G | 443 | G | 444 | U | 445 | C | 446 | * | G | 1300 | U | 1302 | A | 1303 | C | 1304 | cWW | ncWW | ncWW | ||
| 2 | IL_4KQY_011 | 4KQY | 0.2490 | 2 | A | G | 106||||4_555 | G | 107||||4_555 | A | 108||||4_555 | A | 109||||4_555 | * | U | 85||||4_555 | A | 88||||4_555 | G | 89||||4_555 | C | 90||||4_555 | cWW | cWW | |||
| 3 | IL_4KQY_006 | 4KQY | 0.2490 | 2 | Pseudoknot | A | G | 106 | G | 107 | A | 108 | A | 109 | * | U | 85 | A | 88 | G | 89 | C | 90 | cWW | cWW | ||
| 4 | IL_4AOB_009 | 4AOB | 0.1502 | 2 | A | G | 82||||7_555 | A | 83||||7_555 | A | 84||||7_555 | A | 85||||7_555 | * | U | 64||||7_555 | U | 67||||7_555 | G | 68||||7_555 | C | 69||||7_555 | cWW | cWW | |||
| 5 | IL_4AOB_004 | 4AOB | 0.1502 | 2 | Pseudoknot | A | G | 82 | A | 83 | A | 84 | A | 85 | * | U | 64 | U | 67 | G | 68 | C | 69 | cWW | cWW | ||
| 6 | IL_5FJC_004 | 5FJC | 0.0000 | 2 | Pseudoknot | A | G | 82 | A | 83 | A | 84 | A | 85 | * | U | 64 | U | 67 | G | 68 | C | 69 | cWW | cWW | ||
| 7 | IL_3GX5_004 | 3GX5 | 0.0826 | 2 | A | G | 82 | A | 83 | A | 84 | A | 85 | * | U | 64 | U | 67 | G | 68 | C | 69 | cWW | cWW | |||
| 8 | IL_4ERD_002 | 4ERD | 0.8744 | 0 | Tandem non-canonical cWW pairs | C+D | U | 127 | U | 128 | C | 141 | G | 142 | * | U | 127 | U | 128 | C | 141 | G | 142 | cWW | cWW | cWW | cWW |
| 9 | IL_422D_001 | 422D | 0.8931 | 0 | Tandem non-canonical cWW pairs | A+B | U | 7 | U | 8 | C | 9 | G | 10 | * | U | 19 | U | 20 | C | 21 | G | 22 | cWW | cWW | cWW | cWW |
| 10 | IL_165D_001 | 165D | 0.8919 | 0 | A+B | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 12 | U | 13 | C | 14 | G | 15 | cWW | cWW | cWW | cWW | |
| 11 | IL_1QBP_008 | 1QBP | 0.9294 | 0 | F+E | U | 82 | U | 83 | C | 84 | G | 85 | * | U | 67 | U | 68 | C | 69 | G | 70 | cWW | ncWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAA*UCCUGC | 4 |
| UUCG*UUCG | 4 |
| GGAA*UCCAGC | 2 |
| GGUC*GCUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*CCUG | 4 |
| UC*UC | 4 |
| GA*CCAG | 2 |
| GU*CUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Pseudoknot (3)
- Tandem non-canonical cWW pairs (2)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.55 | Max 0.97
Coloring options: