Motif IL_90735.1 Version IL_90735.1 of this group appears in releases 1.5 to 1.15
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-15 | 9-10 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3U5F_042 | 3U5F | 0.0000 | 1 | 6 | 18S rRNA | G | 751 | A | 752 | A | 753 | A | 754 | A | 755 | A | 756 | A | 757 | U | 758 | U | 759 | * | A | 791 | U | 792 | A | 793 | U | 795 | A | 796 | G | 797 | C | 798 | cWW | cWW | cWW |
2 | IL_4BPP_041 | 4BPP | 0.3205 | 1 | A | 18S RRNA | G | 735 | A | 736 | A | 737 | A | 738 | A | 739 | A | 740 | A | 741 | U | 742 | U | 743 | * | A | 774 | C | 775 | A | 776 | U | 778 | A | 779 | G | 780 | C | 781 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAAAAAAUU*AUAUUAGC | 1 |
GAAAAAAUU*ACAUUAGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAAAAAU*UAUUAG | 1 |
AAAAAAU*CAUUAG | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 |
Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_90735.1 | Only in the parent motif |
---|---|---|---|
IL_82113.1 Compare | IL_3U5F_042 | IL_4BPP_041 |
Children motifs
Child motif | Common motif instances | Only in IL_90735.1 | Only in the child motif |
---|---|---|---|
IL_90735.2 Compare | IL_3U5F_042, IL_4BPP_041 | IL_3J7A_033 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
- Heat map statistics
- Min 0.32 | Avg 0.16 | Max 0.32
Coloring options: