Motif IL_90735.2 Version IL_90735.2 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-15 | 9-10 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J7A_033 | 3J7A | 0.3385 | 1 | A | SSU rRNA | G | 801 | A | 802 | G | 803 | U | 804 | A | 805 | A | 806 | A | 807 | U | 808 | U | 809 | * | A | 854 | C | 855 | U | 856 | A | 857 | A | 859 | G | 860 | C | 861 | cWW | ncWW | cWW |
| 2 | IL_3U5F_042 | 3U5F | 0.0000 | 1 | 6 | SSU rRNA | G | 751 | A | 752 | A | 753 | A | 754 | A | 755 | A | 756 | A | 757 | U | 758 | U | 759 | * | A | 791 | U | 792 | A | 793 | U | 795 | A | 796 | G | 797 | C | 798 | cWW | cWW | cWW |
| 3 | IL_4BPP_041 | 4BPP | 0.3205 | 1 | A | SSU rRNA | G | 735 | A | 736 | A | 737 | A | 738 | A | 739 | A | 740 | A | 741 | U | 742 | U | 743 | * | A | 774 | C | 775 | A | 776 | U | 778 | A | 779 | G | 780 | C | 781 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGUAAAUU*ACUAUAGC | 1 |
| GAAAAAAUU*AUAUUAGC | 1 |
| GAAAAAAUU*ACAUUAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUAAAU*CUAUAG | 1 |
| AAAAAAU*UAUUAG | 1 |
| AAAAAAU*CAUUAG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_90735.2 | Only in the parent motif |
|---|---|---|---|
| IL_90735.1 Compare | IL_3U5F_042, IL_4BPP_041 | IL_3J7A_033 |
Children motifs
| Child motif | Common motif instances | Only in IL_90735.2 | Only in the child motif |
|---|---|---|---|
| IL_90735.3 Compare | IL_3J7A_033, IL_4BPP_041 | IL_3U5F_042 | IL_4W23_037 |
| IL_64749.1 Compare | IL_3U5F_042 | IL_3J7A_033, IL_4BPP_041 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW
- Heat map statistics
- Min 0.32 | Avg 0.22 | Max 0.34
Coloring options: