Motif IL_90991.3 Version IL_90991.3 of this group appears in releases 3.12 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_033 | 5TBW | 0.1902 | 4 | Multiple bulged bases | 1 | LSU rRNA | G | 907 | G | 909 | * | U | 919 | C | 923 | cWW | cWW |
| 2 | IL_5J7L_265 | 5J7L | 0.0000 | 4 | Multiple bulged bases | DA | LSU rRNA | G | 775 | G | 777 | * | C | 787 | C | 791 | cWW | cWW |
| 3 | IL_4IOA_020 | 4IOA | 0.0822 | 4 | Multiple bulged bases (H) | X | LSU rRNA | G | 788 | A | 790 | * | U | 800 | C | 804 | cWW | cWW |
| 4 | IL_4V9F_030 | 4V9F | 0.1102 | 4 | Multiple bulged bases | 0 | LSU rRNA | G | 868 | G | 870 | * | C | 880 | C | 884 | cWW | cWW |
| 5 | IL_4Y4O_200 | 4Y4O | 0.1040 | 4 | 2A | LSU rRNA | G | 775 | A | 777 | * | U | 787 | C | 791 | cWW | cWW | |
| 6 | IL_4WF9_027 | 4WF9 | 0.1395 | 4 | Multiple bulged bases | X | LSU rRNA | G | 820 | G | 822 | * | C | 832 | C | 836 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGA*UAACC | 2 |
| GGG*UAAUC | 1 |
| GGG*CAAUC | 1 |
| GGG*CCAUC | 1 |
| GCG*CAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AAU | 2 |
| G*AAC | 2 |
| G*CAU | 1 |
| C*AAU | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (4)
- Multiple bulged bases (H) (1)
- (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.13 | Max 0.25
Coloring options: