Motif IL_90991.8 Version IL_90991.8 of this group appears in releases 3.88 to 3.90
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8VTW_022 | 8VTW | 0.1464 | 4 | Multiple bulged bases (H) | 1A | LSU rRNA | G | 775 | A | 777 | * | U | 787 | C | 791 | cWW | cWW |
2 | IL_4WF9_027 | 4WF9 | 0.1175 | 4 | Multiple bulged bases | X | LSU rRNA | G | 820 | G | 822 | * | C | 832 | C | 836 | cWW | cWW |
3 | IL_7A0S_021 | 7A0S | 0.0000 | 4 | Multiple bulged bases | X | LSU rRNA | G | 788 | A | 790 | * | U | 800 | C | 804 | cWW | cWW |
4 | IL_5J7L_265 | 5J7L | 0.0974 | 4 | Multiple bulged bases | DA | LSU rRNA | G | 775 | G | 777 | * | C | 787 | C | 791 | cWW | cWW |
5 | IL_5TBW_033 | 5TBW | 0.1147 | 4 | Multiple bulged bases | 1 | LSU rRNA | G | 907 | G | 909 | * | U | 919 | C | 923 | cWW | cWW |
6 | IL_8C3A_036 | 8C3A | 0.1438 | 4 | Multiple bulged bases (H) | 1 | LSU rRNA | G | 903 | G | 905 | * | U | 915 | C | 919 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGA*UAACC | 2 |
GGG*UAAUC | 2 |
GCG*CAAUC | 1 |
GGG*CAAUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*AAU | 3 |
G*AAC | 2 |
C*AAU | 1 |
- Annotations
-
- Multiple bulged bases (4)
- Multiple bulged bases (H) (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.11 | Max 0.16
Coloring options: