Motif IL_91102.1 Version IL_91102.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VWW_004 | 1VWW | 0.9285 | 6 | 5 | 28S ribosomal RNA | C | 26 | C | 27 | C | 28 | G | 29 | * | C | 53 | G | 54 | G | 55 | A | 56 | G | 57 | cWW | cWW | ||
| 2 | IL_4BPP_062 | 4BPP | 0.0000 | 1 | A | 18S RRNA | A | 1202 | U | 1203 | U | 1204 | G | 1205 | * | C | 1224 | U | 1225 | U | 1226 | A | 1228 | U | 1229 | cWW | cWw | cWw | cWW |
| 3 | IL_3J7A_023 | 3J7A | 0.7041 | 4 | A | SSU rRNA | G | 521 | G | 522 | U | 523 | G | 524 | * | C | 542 | A | 543 | G | 544 | A | 548 | C | 550 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCAGUAA*UGAACAG | 1 |
| AUUG*CUUGAU | 1 |
| GGUG*CAGAGUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGUA*GAACA | 1 |
| UU*UUGA | 1 |
| GU*AGAGUAA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_91102.1 | Only in the parent motif |
|---|---|---|---|
| IL_49527.1 Compare | IL_4BPP_062 | IL_3J7A_023, IL_1VWW_004 |
Children motifs
| Child motif | Common motif instances | Only in IL_91102.1 | Only in the child motif |
|---|---|---|---|
| IL_91102.2 Compare | IL_3J7A_023, IL_4BPP_062 | IL_1VWW_004 | IL_4W21_012 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-R-cWW-cWW
- Heat map statistics
- Min 0.70 | Avg 0.61 | Max 1.12
Coloring options: