Motif IL_92027.2 Version IL_92027.2 of this group appears in releases 0.7 to 1.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5		6	1-4	1-6	2-3	2-4	2-5	3-5	4-5	4-6
1	IL_2QBG_074	2QBG	0.6455	0		B	23S rRNA	C	1893	C	1894	*	G	1846	A	1847	A	1848	G	1849		cWW	cWW		ncSW
2	IL_3Q1Q_005	3Q1Q	0.5652	0		B	RNase P RNA	C	126	G	127	*	C	148	A	149	A	150	G	151		cWW	cWW	ncWW		ncSH		ncSH
3	IL_1U9S_004	1U9S	0.6061	0	Major groove minor groove platform; mini C-loop	A	RIBONUCLEASE P	C	133	G	134	*	C	164	A	165	A	166	G	167	ncBW	cWW	cWW					cSH
4	IL_4A1B_019	4A1B	0.4086	0		1	26S RRNA	U	469	C	470	*	G	507	A	508	A	509	A	510	ntHS	cWW	ncWW		cSW
5	IL_2ZJR_069	2ZJR	0.3519	0		X	LSU rRNA	C	1876	C	1877	*	G	1838	A	1839	A	1840	G	1841		cWW	cWW		ntSH
6	IL_4A1C_006	4A1C	0.3262	0		3	5S RRNA	C	28	C	29	*	G	48	A	49	A	50	G	51		cWW	cWW		ncSW
7	IL_1S72_101	1S72	0.2490	0		9	5S rRNA	C	29	C	30	*	G	50	A	51	A	52	G	53		cWW	cWW		cSW		cSH
8	IL_2AW7_032	2AW7	0.1209	0		A	16S ribosomal RNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW		ncSW		cSH
9	IL_1I6U_004	1I6U	0.1067	0		D	16S RRNA FRAGMENT	G	12	U	13	*	A	24	U	25	A	26	C	27		cWW	cWW		ncSW		cSH	ncSH
10	IL_1S03_007	1S03	0.0000	0	Major groove minor groove platform; mini C-loop	B	47-MER	G	37	U	38	*	A	12	A	13	A	14	C	15	ntHW	cWW	cWW		ncSW		cSH	ncSH
11	IL_1FJG_025	1FJG	0.0993	0		A	SSU rRNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW				cSH	ncSH
12	IL_3U5F_040	3U5F	0.1600	0		6	18S rRNA	A	746	C	747	*	G	802	A	803	A	804	U	805		cWW	cWW				cSH
13	IL_1S72_068	1S72	0.4447	0		0	LSU rRNA	A	1934	C	1935	*	G	1902	U	1903	A	1904	U	1905		cWW	cWW
14	IL_1U9S_002	1U9S	0.5651	1	Major groove outside cWW, minor groove, intercalation pocket	A	RIBONUCLEASE P	C	228	C	229	*	G	111	A	112	A	114	G	115		cWW	cWW
15	IL_3U5H_091	3U5H	0.5585	0		5	25S rRNA	C	2245	G	2246	*	C	2196	C	2197	A	2198	G	2199		cWW	cWW
16	IL_1U9S_005	1U9S	0.5162	0	Major groove outside cWW, minor groove, intercalation pocket	A	RIBONUCLEASE P	G	161	G	162	*	C	136	A	137	G	138	C	139		cWW	cWW		ntSH
17	IL_3TZR_001	3TZR	0.6186	3	Major groove outside cWW, minor groove, intercalation pocket	B+A	RNA (16-mer)	G	110	C	111	*	G	52	A	53	A	57	C	58		cWW	cWW		ncSW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GAAG	4
GU*AUAC	3
CG*CAAG	2
UC*GAAA	1
GU*AAAC	1
AC*GAAU	1
AC*GUAU	1
CC*GAAAG	1
CG*CCAG	1
GG*CAGC	1
GC*GAACUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AA	9
*UA	4
*AAA	1
*CA	1
*AG	1
*AACUA	1

Release history

Release	0.7	0.8	0.9	0.10	0.11	0.12	1.0
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_92027.2	Only in the parent motif
IL_92027.1 Compare	IL_1S72_101, IL_1S03_007, IL_1U9S_005, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_2QBG_074, IL_1S72_068, IL_4A1C_006, IL_3Q1Q_005, IL_1I6U_004, IL_2ZJR_069, IL_3U5F_040, IL_2AW7_032, IL_4A1B_019, IL_3U5H_091	IL_3TZR_001	IL_1S03_003, IL_1I6U_002

Children motifs

Child motif	Common motif instances	Only in IL_92027.2	Only in the child motif
IL_92027.3 Compare	IL_4A1C_006, IL_1S03_007, IL_1U9S_005, IL_1U9S_004, IL_1FJG_025, IL_1U9S_002, IL_2QBG_074, IL_3TZR_001, IL_1S72_068, IL_1S72_101, IL_3Q1Q_005, IL_3U5H_091, IL_3U5F_040, IL_2AW7_032, IL_4A1B_019, IL_1I6U_004	IL_2ZJR_069	IL_4IOA_068

Annotations: Major groove outside cWW, minor groove, intercalation pocket (3)
Major groove minor groove platform; mini C-loop (2)
Basepair signature: cWW-cSW-cWW
Heat map statistics: Min 0.10 | Avg 0.49 | Max 0.91

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Coloring options: Nucleotide numbers

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