IL_92027.6

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5		6	1-4	1-6	2-3	2-4	2-5	3-5	4-5	4-6
1	IL_3TZR_001	3TZR	0.6731	3	Major groove intercalation	B+A	RNA (16-mer)	G	110	C	111	*	G	52	A	53	A	57	C	58		cWW	cWW		ncSW
2	IL_1S72_068	1S72	0.5040	0	Major groove minor groove platform; mini C-loop (H)	0	LSU rRNA	A	1934	C	1935	*	G	1902	U	1903	A	1904	U	1905		cWW	cWW
3	IL_1U9S_002	1U9S	0.5089	1	Major groove intercalation	A	RIBONUCLEASE P	C	228	C	229	*	G	111	A	112	A	114	G	115		cWW	cWW
4	IL_3U5H_091	3U5H	0.5115	0		5	25S rRNA	C	2245	G	2246	*	C	2196	C	2197	A	2198	G	2199		cWW	cWW
5	IL_4CUV_092	4CUV	0.5318	0		1	25S RRNA	C	2245	G	2246	*	C	2196	C	2197	A	2198	G	2199		cWW	cWW
6	IL_1VW3_054	1VW3	0.4793	0		A	21S ribosomal RNA	U	1803	A	1804	*	U	1745	C	1746	C	1747	A	1748		cWW	cWW
7	IL_1U9S_005	1U9S	0.5489	0	Minor groove platform, major groove intercalation	A	RIBONUCLEASE P	G	161	G	162	*	C	136	A	137	G	138	C	139		cWW	cWW		ntSH
8	IL_4IOA_068	4IOA	0.3345	0	Major groove minor groove platform; mini C-loop (H)	X	LSU rRNA	C	1876	C	1877	*	G	1838	A	1839	A	1840	G	1841		ncWW	cWW		ntSH			ncSH
9	IL_1VX2_034	1VX2	0.3277	0		2	18S ribosomal RNA	A	802	C	803	*	G	860	A	861	A	862	U	863		cWW	cWW
10	IL_4CUX_039	4CUX	0.3893	0		2	18S RRNA	A	746	C	747	*	G	802	A	803	A	804	U	805		cWW	cWW
11	IL_2AW7_032	2AW7	0.2914	0		A	16S ribosomal RNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW		ncSW		cSH
12	IL_1I6U_004	1I6U	0.2452	0		D	16S RRNA FRAGMENT	G	12	U	13	*	A	24	U	25	A	26	C	27		cWW	cWW		ncSW		cSH	ncSH
13	IL_1S03_007	1S03	0.2451	0	Major groove minor groove platform; mini C-loop	B	47-MER	G	37	U	38	*	A	12	A	13	A	14	C	15	ntHW	cWW	cWW		ncSW		cSH	ncSH
14	IL_1FJG_025	1FJG	0.2814	0	Major groove minor groove platform; mini C-loop (H)	A	SSU rRNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW				cSH	ncSH
15	IL_3U5F_040	3U5F	0.3070	0		6	18S rRNA	A	746	C	747	*	G	802	A	803	A	804	U	805		cWW	cWW				cSH
16	IL_1VX6_142	1VX6	0.1264	0		B	5S ribosomal RNA	C	28	C	29	*	G	48	A	49	A	50	G	51		cWW	cWW		ncSW		cSH
17	IL_4QCN_110	4QCN	0.0000	0		B	5S Ribosomal RNA	C	30	C	31	*	G	51	A	52	A	53	G	54	ncBW	cWW	cWW		cSW		ncSH	ncSH
18	IL_1S72_101	1S72	0.0913	0	Major groove minor groove platform; mini C-loop (H)	9	5S rRNA	C	29	C	30	*	G	50	A	51	A	52	G	53		cWW	cWW		cSW		cSH
19	IL_4A1C_006	4A1C	0.1712	0		3	5S RRNA	C	28	C	29	*	G	48	A	49	A	50	G	51		cWW	cWW		ncSW
20	IL_1VWW_161	1VWW	0.2214	0		7	5S ribosomal RNA	C	28	C	29	*	G	48	A	49	A	50	G	51	ncBW	cWW	cWW				ncSH
21	IL_4A1B_019	4A1B	0.3239	0		1	26S RRNA	U	469	C	470	*	G	507	A	508	A	509	A	510	ntHS	cWW	ncWW		cSW
22	IL_1U9S_004	1U9S	0.4801	0	Major groove minor groove platform; mini C-loop	A	RIBONUCLEASE P	C	133	G	134	*	C	164	A	165	A	166	G	167	ncBW	cWW	cWW					cSH
23	IL_3Q1Q_005	3Q1Q	0.4630	0		B	RNase P RNA	C	126	G	127	*	C	148	A	149	A	150	G	151		cWW	cWW	ncWW		ncSH		ncSH
24	IL_2QBG_074	2QBG	0.7033	0		B	23S rRNA	C	1893	C	1894	*	G	1846	A	1847	A	1848	G	1849		cWW	cWW		ncSW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GAAG	7
AC*GAAU	3
GU*AUAC	3
CG*CCAG	2
CG*CAAG	2
GC*GAACUAC	1
AC*GUAU	1
CC*GAAAG	1
UA*UCCA	1
GG*CAGC	1
GU*AAAC	1
UC*GAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AA	14
*UA	4
*CA	2
*AACUA	1
*AAA	1
*CC	1
*AG	1

Release history

Release	1.17
Date	2014-09-04
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in IL_92027.6	Only in the parent motif
IL_92027.5 Compare	IL_1FJG_025, IL_1S72_101, IL_1S03_007, IL_3Q1Q_005, IL_4CUX_039, IL_1U9S_004, IL_1U9S_005, IL_1U9S_002, IL_2QBG_074, IL_3TZR_001, IL_1S72_068, IL_4A1C_006, IL_3U5H_091, IL_3U5F_040, IL_1VW3_054, IL_2AW7_032, IL_4IOA_068, IL_4CUV_092, IL_4A1B_019, IL_1I6U_004	IL_4QCN_110, IL_1VX2_034, IL_1VX6_142, IL_1VWW_161	IL_4NVV_109

Children motifs

Child motif	Common motif instances	Only in IL_92027.6	Only in the child motif
IL_92027.7 Compare	IL_4A1C_006, IL_1FJG_025, IL_1S72_068, IL_3U5F_040, IL_2AW7_032, IL_4A1B_019, IL_4CUV_092, IL_1U9S_004, IL_1U9S_005, IL_1U9S_002, IL_3TZR_001, IL_3Q1Q_005, IL_1VX6_142, IL_1S72_101, IL_1I6U_004, IL_1VW3_054, IL_4IOA_068, IL_1S03_007, IL_4CUX_039, IL_2QBG_074, IL_4QCN_110, IL_3U5H_091	IL_1VX2_034, IL_1VWW_161	IL_4W21_171, IL_4W23_035, IL_4PDB_002

Motif IL_92027.6 Version IL_92027.6 of this group appears in releases 1.17 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_92027.6 Version IL_92027.6 of this group appears in releases 1.17 to 1.17

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