Motif IL_92027.7 Version IL_92027.7 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-3 | 1-6 | 2-3 | 2-4 | 2-5 | 2-6 | 3-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_074 | 2QBG | 0.6455 | 0 | B | 23S rRNA | G | 1846 | A | 1847 | A | 1848 | G | 1849 | * | C | 1893 | C | 1894 | cWW | ncWS | cWW | ||||||
| 2 | IL_1S72_068 | 1S72 | 0.4447 | 0 | Major groove minor groove platform; mini C-loop (H) | 0 | LSU rRNA | G | 1902 | U | 1903 | A | 1904 | U | 1905 | * | A | 1934 | C | 1935 | cWW | cWW | ||||||
| 3 | IL_4W23_035 | 4W23 | 0.2388 | 0 | 2 | 18S ribosomal RNA | G | 860 | A | 861 | A | 862 | U | 863 | * | A | 802 | C | 803 | cWW | cWW | |||||||
| 4 | IL_4CUX_039 | 4CUX | 0.2691 | 0 | 2 | 18S RRNA | G | 802 | A | 803 | A | 804 | U | 805 | * | A | 746 | C | 747 | cWW | cWW | |||||||
| 5 | IL_2AW7_032 | 2AW7 | 0.1209 | 0 | A | 16S ribosomal RNA | A | 640 | U | 641 | A | 642 | C | 643 | * | G | 597 | U | 598 | cWW | cSH | ncWS | cWW | |||||
| 6 | IL_1I6U_004 | 1I6U | 0.1067 | 0 | D | 16S RRNA FRAGMENT | A | 24 | U | 25 | A | 26 | C | 27 | * | G | 12 | U | 13 | cWW | cSH | ncSH | ncWS | cWW | ||||
| 7 | IL_1S03_007 | 1S03 | 0.0000 | 0 | Major groove minor groove platform; mini C-loop | B | 47-MER | A | 12 | A | 13 | A | 14 | C | 15 | * | G | 37 | U | 38 | cWW | cSH | ncSH | ntWH | ncWS | cWW | ||
| 8 | IL_4PDB_002 | 4PDB | 0.0727 | 0 | Major groove minor groove platform; mini C-loop | I | SELEX RNA aptamer | A | 24 | U | 25 | A | 26 | U | 27 | * | A | 14 | U | 15 | cWW | ncSH | ncWS | cWW | ||||
| 9 | IL_1FJG_025 | 1FJG | 0.0993 | 0 | Major groove minor groove platform; mini C-loop (H) | A | SSU rRNA | A | 640 | U | 641 | A | 642 | C | 643 | * | G | 597 | U | 598 | cWW | cSH | ncSH | cWW | ||||
| 10 | IL_3U5F_040 | 3U5F | 0.1600 | 0 | 6 | 18S rRNA | G | 802 | A | 803 | A | 804 | U | 805 | * | A | 746 | C | 747 | cWW | cSH | cWW | ||||||
| 11 | IL_1VX6_142 | 1VX6 | 0.2351 | 0 | B | 5S ribosomal RNA | G | 48 | A | 49 | A | 50 | G | 51 | * | C | 28 | C | 29 | cWW | cSH | ncWS | cWW | |||||
| 12 | IL_4QCN_110 | 4QCN | 0.2451 | 0 | B | 5S Ribosomal RNA | G | 51 | A | 52 | A | 53 | G | 54 | * | C | 30 | C | 31 | cWW | ncSH | ncSH | ncWB | cWS | cWW | |||
| 13 | IL_1S72_101 | 1S72 | 0.2490 | 0 | Major groove minor groove platform; mini C-loop (H) | 9 | 5S rRNA | G | 50 | A | 51 | A | 52 | G | 53 | * | C | 29 | C | 30 | cWW | cSH | cWS | cWW | ||||
| 14 | IL_4W21_171 | 4W21 | 0.2952 | 0 | 7 | 5S ribosomal RNA | G | 48 | A | 49 | A | 50 | G | 51 | * | C | 28 | C | 29 | cWW | ncSH | ncSH | ncWB | cWW | ||||
| 15 | IL_4A1C_006 | 4A1C | 0.3262 | 0 | 3 | 5S RRNA | G | 48 | A | 49 | A | 50 | G | 51 | * | C | 28 | C | 29 | cWW | ncWS | cWW | ||||||
| 16 | IL_4IOA_068 | 4IOA | 0.3234 | 0 | Major groove minor groove platform; mini C-loop (H) | X | LSU rRNA | G | 1838 | A | 1839 | A | 1840 | G | 1841 | * | C | 1876 | C | 1877 | cWW | ncSH | ntHS | ncWW | ||||
| 17 | IL_4A1B_019 | 4A1B | 0.4086 | 0 | 1 | 26S RRNA | G | 507 | A | 508 | A | 509 | A | 510 | * | U | 469 | C | 470 | ncWW | ntSH | cWS | cWW | |||||
| 18 | IL_1U9S_004 | 1U9S | 0.6061 | 0 | Major groove minor groove platform; mini C-loop | A | RIBONUCLEASE P | C | 164 | A | 165 | A | 166 | G | 167 | * | C | 133 | G | 134 | cWW | cSH | ncWB | cWW | ||||
| 19 | IL_3Q1Q_005 | 3Q1Q | 0.5652 | 0 | B | RNase P RNA | C | 148 | A | 149 | A | 150 | G | 151 | * | C | 126 | G | 127 | ncSH | cWW | ncSH | ncWW | cWW | ||||
| 20 | IL_1U9S_002 | 1U9S | 0.5651 | 1 | Major groove intercalation | A | RIBONUCLEASE P | G | 111 | A | 112 | A | 114 | G | 115 | * | C | 228 | C | 229 | cWW | cWW | ||||||
| 21 | IL_3U5H_091 | 3U5H | 0.5585 | 0 | 5 | 25S rRNA | C | 2196 | C | 2197 | A | 2198 | G | 2199 | * | C | 2245 | G | 2246 | cWW | cWW | |||||||
| 22 | IL_4CUV_092 | 4CUV | 0.5589 | 0 | 1 | 25S RRNA | C | 2196 | C | 2197 | A | 2198 | G | 2199 | * | C | 2245 | G | 2246 | cWW | cWW | |||||||
| 23 | IL_1VW3_054 | 1VW3 | 0.5193 | 0 | A | 21S ribosomal RNA | U | 1745 | C | 1746 | C | 1747 | A | 1748 | * | U | 1803 | A | 1804 | cWW | cWW | |||||||
| 24 | IL_1U9S_005 | 1U9S | 0.5162 | 0 | Minor groove platform, major groove intercalation | A | RIBONUCLEASE P | C | 136 | A | 137 | G | 138 | C | 139 | * | G | 161 | G | 162 | cWW | ntHS | cWW | |||||
| 25 | IL_3TZR_001 | 3TZR | 0.6186 | 3 | Major groove intercalation | A+B | RNA (20-mer) + RNA (16-mer) | G | 52 | A | 53 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CC | 7 |
| GAAU*AC | 3 |
| AUAC*GU | 3 |
| CAAG*CG | 2 |
| CCAG*CG | 2 |
| GUAU*AC | 1 |
| AAAC*GU | 1 |
| AUAU*AU | 1 |
| GAAA*UC | 1 |
| GAAAG*CC | 1 |
| UCCA*UA | 1 |
| CAGC*GG | 1 |
| GAACUAC*GC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 14 |
| UA* | 5 |
| CA* | 2 |
| AAA* | 1 |
| CC* | 1 |
| AG* | 1 |
| AACUA* | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_92027.7 | Only in the parent motif |
|---|---|---|---|
| IL_92027.6 Compare | IL_4A1C_006, IL_1FJG_025, IL_1S72_068, IL_3U5F_040, IL_2AW7_032, IL_4A1B_019, IL_4CUV_092, IL_1U9S_004, IL_1U9S_005, IL_1U9S_002, IL_3TZR_001, IL_3Q1Q_005, IL_1VX6_142, IL_1S72_101, IL_1I6U_004, IL_1VW3_054, IL_4IOA_068, IL_1S03_007, IL_4CUX_039, IL_2QBG_074, IL_4QCN_110, IL_3U5H_091 | IL_4W21_171, IL_4W23_035, IL_4PDB_002 | IL_1VX2_034, IL_1VWW_161 |
Children motifs
This motif has no children motifs.- Annotations
-
- (15)
- Major groove minor groove platform; mini C-loop (H) (4)
- Major groove minor groove platform; mini C-loop (3)
- Major groove intercalation (2)
- Minor groove platform, major groove intercalation (1)
- Basepair signature
- cWW-cSH-cWS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.45 | Max 0.91
Coloring options: