Motif IL_92321.2 Version IL_92321.2 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_026 | 2ZJR | 0.8145 | 0 | X | LSU rRNA | C | 870 | U | 871 | G | 872 | U | 873 | A | 874 | G | 875 | * | C | 927 | G | 928 | A | 929 | A | 930 | G | 931 | G | 932 | cWW | ncWW | ntWH | tHS | cWW | ||
| 2 | IL_4A1B_017 | 4A1B | 0.7746 | 0 | 1 | 26S RRNA | G | 457 | G | 458 | G | 459 | A | 460 | A | 461 | G | 462 | * | C | 516 | A | 517 | G | 518 | A | 519 | A | 520 | C | 521 | cWW | ntSH | cWW | ||||
| 3 | IL_4A1B_037 | 4A1B | 0.2261 | 1 | 1 | 26S RRNA | G | 858 | U | 859 | G | 860 | A | 861 | A | 862 | G | 863 | * | U | 880 | G | 881 | G | 882 | A | 883 | A | 884 | C | 886 | cWW | ntSH | tHS | tHS | cWW | ||
| 4 | IL_1FJG_053 | 1FJG | 0.0000 | 0 | A | SSU rRNA | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | * | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | cWW | cwW | tSH | tHS | tHS | cWW | |
| 5 | IL_2AW7_059 | 2AW7 | 0.1360 | 0 | A | 16S ribosomal RNA | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | * | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | cWW | cwW | tSH | ntHS | tHS | cWW | |
| 6 | IL_2XZM_080 | 2XZM | 0.2040 | 0 | A | 18S RRNA | U | 1538 | U | 1539 | G | 1540 | A | 1541 | A | 1542 | C | 1543 | * | G | 1512 | G | 1513 | G | 1514 | A | 1515 | U | 1516 | A | 1517 | cWW | cwW | tSH | ntHS | tHS | cWW | |
| 7 | IL_3U5F_079 | 3U5F | 0.2194 | 0 | 6 | 18S rRNA | U | 1566 | U | 1567 | C | 1568 | A | 1569 | A | 1570 | C | 1571 | * | G | 1540 | G | 1541 | G | 1542 | A | 1543 | U | 1544 | A | 1545 | cWW | cwW | tHS | tHS | cWW | ||
| 8 | IL_3U5H_027 | 3U5H | 0.2676 | 0 | 5 | 25S rRNA | C | 758 | U | 759 | G | 760 | A | 761 | U | 762 | G | 763 | * | C | 768 | G | 769 | G | 770 | A | 771 | U | 772 | G | 773 | cWW | cwW | tSH | ntHS | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGAAG*CGGAUU | 2 |
| CUGUAG*CGAAGG | 1 |
| GGGAAG*CAGAAC | 1 |
| GUGAAG*UGGAAGC | 1 |
| GGGAUA*UUGAAC | 1 |
| UUCAAC*GGGAUA | 1 |
| CUGAUG*CGGAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAA*GGAU | 2 |
| UGUA*GAAG | 1 |
| GGAA*AGAA | 1 |
| UGAA*GGAAG | 1 |
| GGAU*UGAA | 1 |
| UCAA*GGAU | 1 |
| UGAU*GGAU | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_92321.2 | Only in the parent motif |
|---|---|---|---|
| IL_92321.1 Compare | IL_2ZJR_026, IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_3U5H_027, IL_1FJG_053, IL_2XZM_080 | IL_4A1B_017 | IL_3UXR_065 |
| IL_80494.1 Compare | IL_4A1B_017 | IL_2ZJR_026, IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_3U5H_027, IL_1FJG_053, IL_2XZM_080 | IL_3P49_012, IL_1S72_057, IL_3B5F_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_92321.2 | Only in the child motif |
|---|---|---|---|
| IL_92321.3 Compare | IL_2AW7_059, IL_3U5F_079, IL_4A1B_037, IL_4A1B_017, IL_3U5H_027, IL_1FJG_053, IL_2XZM_080 | IL_2ZJR_026 |
- Annotations
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-cWW
- Heat map statistics
- Min 0.14 | Avg 0.44 | Max 0.86
Coloring options: