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Motif IL_92540.1 Version IL_92540.1 of this group appears in releases 3.91 to 3.94

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-21-52-53-4
1 IL_8T29_0038T290.65300Other ILRRNA (90-MER)C54A55A56*U65G66cWWcWW
2 IL_4R4V_0014R4V0.28700Minor groove platformAVS ribozyme RNAU777U778A779*U607G608cWWcWW
3 IL_7A0S_0037A0S0.36810Minor groove platformX LSU rRNAU447C448C449*G42A43cSHcWWcWW
4 IL_9DFE_3489DFE0.38100Minor groove platform1A LSU rRNAU434C435C436*G42A43cSHcWWcWW
5 IL_5J7L_2475J7L0.22310Minor groove platformDA LSU rRNAU434C435C436*G43A44cSHcWWcWW
6 IL_3IWN_0013IWN0.37040Minor groove platformAC-di-GMP riboswitchG89A90U91*A2C3ncWWcWW
7 IL_5T83_0035T830.28070Minor groove platformAGuanidine-I riboswitchC36U37G38*C21G22ncSHcWWntHScWW
8 IL_7MLW_0047MLW0.29120Minor groove platformFGuanidine-I riboswitchC45U46G47*C16G17ncSHcWWtHScWW
9 IL_6DLR_0036DLR0.23100Minor groove platformAGuanidine-I riboswitchC39U40G41*C21G22cSHcWWtHScWW
10 IL_8P9A_2678P9A0.28600Minor groove platformAR LSU rRNAU1050U1051U1052*A997A998cSHcWWntHScWW
11 IL_2QWY_0092QWY0.30280Minor groove platformCSAM-II riboswitchU40A41G42*C23A24cWWtHScWW
12 IL_5ML7_0095ML70.36940Minor groove platformB23S ribosomal RNAC2177A2178G2179*C2201G2202cWWtHScWW
13 IL_6DTD_0036DTD0.34390Minor groove platformCRNA (37-MER)G22A23A24*U15C16cSHcWWtHScWW
14 IL_5J7L_0425J7L0.30100Minor groove platformAA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
15 IL_4LFB_0384LFB0.25380Minor groove platformA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
16 IL_5J7L_3245J7L0.25271Minor groove platformDA LSU rRNAU2438C2440U2441*A2070A2071cSHcWWcWW
17 IL_4V9F_0754V9F0.27511Minor groove platform0 LSU rRNAU2473C2475C2476*G2111A2112cSHcWWcWW
18 IL_4WF9_0814WF90.29211Minor groove platformX LSU rRNAU2465C2467C2468*G2097A2098cSHcWWcWW
19 IL_9DFE_0819DFE0.28581Minor groove platform1A LSU rRNAU2438C2440C2441*G2070A2071cSHcWWcWW
20 IL_8P9A_3228P9A0.29331Minor groove platformAR LSU rRNAU2807C2809C2810*G2412A2413cSHcWWcWW
21 IL_7A0S_0767A0S0.28101Minor groove platformX LSU rRNAU2417C2419C2420*G2053A2054cSHcWWcWW
22 IL_7A0S_0287A0S0.10290Minor groove platformX LSU rRNAU925C926C927*G875A876ncSHcWWcWW
23 IL_9DFE_0279DFE0.09600Minor groove platform1A LSU rRNAU913C914C915*G862A863cSHcWWcWW
24 IL_4WF9_0324WF90.08590Minor groove platformX LSU rRNAU958C959C960*G907A908cSHcWWcWW
25 IL_4V9F_0344V9F0.00000Minor groove platform0 LSU rRNAU1009C1010C1011*G956A957cSHcWWcWW
26 IL_8C3A_4518C3A0.28010Minor groove platformCM SSU rRNAC1445A1446C1447*G1163G1164cWWcWW
27 IL_8P9A_4338P9A0.54380Minor groove platformsR SSU rRNAC1459A1460C1461*G1178G1179cWWcWW
28 IL_7TZS_0037TZS0.29040Minor groove platform relatedXTPP riboswitch (THI element)C23C24U25*A35G36ncSHcWWcWW
29 IL_3K0J_0023K0J0.34190Minor groove platform relatedERNA (87-MER)C18C19U20*A35G36ncSHcWWcWW
30 IL_6CZR_1196CZR0.47371Multiple bulged bases1a SSU rRNAU123A125C126*G227G228cWWcWW
31 IL_4LFB_0074LFB0.43991Multiple bulged basesA SSU rRNAU129A130C131*G231G232cWWcWW
32 IL_1J9H_0051J9H0.47410Other ILA+BRNA (9-mer)G3U4C5*G15CBR16cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCC*GA7
UACC*GA5
CAC*GG4
CUG*CG3
CCU*AG2
UGAC*GG2
CAA*UG1
UUA*UG1
GAU*AC1
UUU*AA1
UAG*CA1
CAG*CG1
GAA*UC1
UACU*AA1
GUC*G(CBR)1
Non-Watson-Crick part of the motif
SequenceCounts
A*9
C*9
U*6
AC*6
GA*2

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusNew id, > 2 parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (26)
  • Other IL (2)
  • Minor groove platform related (2)
  • Multiple bulged bases (2)
    • Basepair signature
    cWW-cSH-cWW
    Heat map statistics
    Min 0.06 | Avg 0.41 | Max 0.86
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