#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 11 121-122-102-113-104-95-86-7
1 IL_2PXV_0022PXV0.95160B4.5 S RNAU146C147A148G149G150U151*A160A161G162C163A164G165cWWntWHtSHtHWtHScWWcWW
2 IL_1LNT_0021LNT0.95160tSH-tHW-tHS-cWWA+BRNA (12-mer)U4C5A6G7G8U9*A16A17G18C19A20G21cWWtSHtHWtHScWWcWW
3 IL_1L9A_0081L9A0.92830tSH-tHW-tHS-cWWBsignal recognition particle RNA S domainG204A205G206C207A208G209*C190C191A192G193G194U195cWWcWWcWBtWHncWWcWW
4 IL_3G78_0073G780.96140AGroup II catalytic intron D1-D4-1U214A215C216A217G218A219*U158A159G160G161U162A163cWWncWWncWWntHHcWW
5 IL_1DUH_0041DUH0.68170A4.5S RNA DOMAIN IVU45||||4_555C46||||4_555A47||||4_555G48||||4_555G49||||4_555U50||||4_555*A59A60G61C62A63G64cWWtSHtHWtHScWWcWW
6 IL_1D4R_0021D4R0.00000Other ILA+B29-MER OF MODIFIED SRP RNA HELIX 6G12G13G14A15G16C17*G12G13G14A15G16C17cWWcBWcWBcWW
7 IL_1DUH_0021DUH0.66130A4.5S RNA DOMAIN IVU45C46A47G48G49U50*A59||||4_555A60||||4_555G61||||4_555C62||||4_555A63||||4_555G64||||4_555cWWtSHtHWtHScWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCAGGU*AAGCAG3
GAGCAG*CCAGGU1
UACAGA*UAGGUA1
AAGCAG*UCAGGU1
GGGAGC*GGGAGC1
Non-Watson-Crick part of the motif
SequenceCounts
CAGG*AGCA3
AGCA*CAGG2
ACAG*AGGU1
GGAG*GGAG1

Release history

Release0.10.20.30.4
Date2011-12-082011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_92741.1Only in the child motif
IL_67582.1
Compare
IL_2PXV_002, IL_1LNT_002IL_3G78_007, IL_1DUH_002, IL_1DUH_004, IL_1L9A_008, IL_1D4R_002IL_1MFQ_007
IL_99388.1
Compare
IL_1DUH_002, IL_1DUH_004IL_2PXV_002, IL_1LNT_002, IL_3G78_007, IL_1L9A_008, IL_1D4R_002IL_2XXA_008, IL_2XXA_015
IL_52634.1
Compare
IL_3G78_007IL_2PXV_002, IL_1L9A_008, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_1D4R_002IL_3O58_030
IL_86121.1
Compare
IL_1D4R_002IL_2PXV_002, IL_1L9A_008, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_3G78_007IL_3O58_159, IL_3O58_035, IL_3O30_011
Annotations
  • (4)
  • tSH-tHW-tHS-cWW (2)
  • Other IL (1)
  • Basepair signature
    Heat map statistics
    Min 0.14 | Avg 0.57 | Max 0.96
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