Motif IL_92741.1 Version IL_92741.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2PXV_002 | 2PXV | 0.9516 | 0 | B | 4.5 S RNA | U | 146 | C | 147 | A | 148 | G | 149 | G | 150 | U | 151 | * | A | 160 | A | 161 | G | 162 | C | 163 | A | 164 | G | 165 | cWW | ntWH | tSH | tHW | tHS | cWW | cWW | |
2 | IL_1LNT_002 | 1LNT | 0.9516 | 0 | tSH-tHW-tHS-cWW | A+B | RNA (12-mer) | U | 4 | C | 5 | A | 6 | G | 7 | G | 8 | U | 9 | * | A | 16 | A | 17 | G | 18 | C | 19 | A | 20 | G | 21 | cWW | tSH | tHW | tHS | cWW | cWW | |
3 | IL_1L9A_008 | 1L9A | 0.9283 | 0 | tSH-tHW-tHS-cWW | B | signal recognition particle RNA S domain | G | 204 | A | 205 | G | 206 | C | 207 | A | 208 | G | 209 | * | C | 190 | C | 191 | A | 192 | G | 193 | G | 194 | U | 195 | cWW | cWW | cWB | tWH | ncWW | cWW | |
4 | IL_3G78_007 | 3G78 | 0.9614 | 0 | A | Group II catalytic intron D1-D4-1 | U | 214 | A | 215 | C | 216 | A | 217 | G | 218 | A | 219 | * | U | 158 | A | 159 | G | 160 | G | 161 | U | 162 | A | 163 | cWW | ncWW | ncWW | ntHH | cWW | |||
5 | IL_1DUH_004 | 1DUH | 0.6817 | 0 | A | 4.5S RNA DOMAIN IV | U | 45||||4_555 | C | 46||||4_555 | A | 47||||4_555 | G | 48||||4_555 | G | 49||||4_555 | U | 50||||4_555 | * | A | 59 | A | 60 | G | 61 | C | 62 | A | 63 | G | 64 | cWW | tSH | tHW | tHS | cWW | cWW | ||
6 | IL_1D4R_002 | 1D4R | 0.0000 | 0 | Other IL | A+B | 29-MER OF MODIFIED SRP RNA HELIX 6 | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | * | G | 12 | G | 13 | G | 14 | A | 15 | G | 16 | C | 17 | cWW | cBW | cWB | cWW | |||
7 | IL_1DUH_002 | 1DUH | 0.6613 | 0 | A | 4.5S RNA DOMAIN IV | U | 45 | C | 46 | A | 47 | G | 48 | G | 49 | U | 50 | * | A | 59||||4_555 | A | 60||||4_555 | G | 61||||4_555 | C | 62||||4_555 | A | 63||||4_555 | G | 64||||4_555 | cWW | tSH | tHW | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UCAGGU*AAGCAG | 3 |
GAGCAG*CCAGGU | 1 |
UACAGA*UAGGUA | 1 |
AAGCAG*UCAGGU | 1 |
GGGAGC*GGGAGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CAGG*AGCA | 3 |
AGCA*CAGG | 2 |
ACAG*AGGU | 1 |
GGAG*GGAG | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_92741.1 | Only in the child motif |
---|---|---|---|
IL_67582.1 Compare | IL_2PXV_002, IL_1LNT_002 | IL_3G78_007, IL_1DUH_002, IL_1DUH_004, IL_1L9A_008, IL_1D4R_002 | IL_1MFQ_007 |
IL_99388.1 Compare | IL_1DUH_002, IL_1DUH_004 | IL_2PXV_002, IL_1LNT_002, IL_3G78_007, IL_1L9A_008, IL_1D4R_002 | IL_2XXA_008, IL_2XXA_015 |
IL_52634.1 Compare | IL_3G78_007 | IL_2PXV_002, IL_1L9A_008, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_1D4R_002 | IL_3O58_030 |
IL_86121.1 Compare | IL_1D4R_002 | IL_2PXV_002, IL_1L9A_008, IL_1DUH_002, IL_1LNT_002, IL_1DUH_004, IL_3G78_007 | IL_3O58_159, IL_3O58_035, IL_3O30_011 |
- Annotations
-
- (4)
- tSH-tHW-tHS-cWW (2)
- Other IL (1)
- Basepair signature
- Heat map statistics
- Min 0.14 | Avg 0.57 | Max 0.96
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