Motif IL_93108.1 Version IL_93108.1 of this group appears in releases 4.1 to 4.15

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10		11		12	break		13		14		15		16		17		18		19		20		21		22	1-22	2-6	2-17	3-8	4-7	4-16	6-20	7-19	9-18	10-15	11-14	12-13	16-19	17-20
1	IL_4KZD_007	4KZD	0.1512	3	G-quadruplex	R	RNA (84-MER)	A	53	G	54	U	55	G	57	A	58	G	59	G	61	U	62	G	63	A	64	G	65	C	66	*	G	19	A	20	A	21	G	22	G	23	C	25	G	26	G	27	G	28	U	29	cWW	cHW	cWH		cHW	cWH	cHW	cHW	cWW		cWW	cWW	cWH	cWH
2	IL_4TS2_010	4TS2	0.1028	3	G-quadruplex	Y+X	Spinach aptamer RNA, bimolecular construct	A	64	G	65	U	66	G	68	A	69	G	70	G	72	U	73	G	74	A	75	G	76	C	77	*	G	22	A	23	A	24	G	25	G	26	C	28	G	29	G	30	G	31	U	32	cWW	cHW	cWH	ntSW	cHW	cWH	cHW	cHW	cWW	ncWw	cWW	cWW	cWH	cWH
3	IL_7L0Z_005	7L0Z	0.1380	3	G-quadruplex	G	RNA (69-MER)	A	45	G	46	U	47	G	49	A	50	G	51	G	53	U	54	G	55	G	56	G	57	C	58	*	G	12	A	13	G	14	G	15	G	16	C	18	G	19	G	20	G	21	U	22	cWW	cHW	cWH		cHW	cWH	cHW	cHW	cWW	ncBW	cWW	cWW	cWH	cWH
4	IL_8K7W_002	8K7W	0.0667	3		A	RNA (49-MER)	A	34	G	35	U	36	G	38	A	39	G	40	G	42	U	43	G	44	G	45	G	46	C	47	*	G	3	A	4	C	5	G	6	G	7	C	9	G	10	G	11	G	12	U	13	cWW	cHW	cWH	ntSW	cHW	cWH	cHW	cHW	cWW		cWW	cWW	cWH	cWH
5	IL_8K85_002	8K85	0.0000	3		B+A	RNA (56-MER)	A	40	G	41	U	42	G	44	U	45	G	46	G	48	U	49	G	50	G	51	G	52	C	53	*	G	4	A	5	C	6	G	7	G	8	C	10	G	11	G	12	G	13	U	14	cWW	cHW	cWH	ntSW	cHW	cWH	cHW	cHW	cWW		cWW	cWW	cWH	cWH
6	IL_8K85_011	8K85	0.0587	3		A+B	RNA (56-MER)	A	40	G	41	U	42	G	44	U	45	G	46	G	48	U	49	G	50	G	51	G	52	C	53	*	G	4	A	5	C	6	G	7	G	8	C	10	G	11	G	12	G	13	U	14	cWW	cHW	cWH	ntSW	cHW	cWH	cHW	cHW	cWW		cWW	cWW	cWH	cWH

3D structures

Complete motif including flanking bases

Sequence	Counts
AGUAGAGUGUGAGC*GAAGGACGGGU	2
AGUAGUGUGUGGGC*GACGGUCGGGU	2
AGUAGAGUGUGGGC*GAGGGUCGGGU	1
AGUAGAGUGUGGGC*GACGGUCGGGU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAGAGUGUGAG*AAGGACGGG	2
GUAGUGUGUGGG*ACGGUCGGG	2
GUAGAGUGUGGG*AGGGUCGGG	1
GUAGAGUGUGGG*ACGGUCGGG	1

Release history

Release	4.1	4.2	4.3	4.4	4.5	4.6	4.7	4.8	4.9	4.10	4.11	4.12	4.13	4.14	4.15
Date	2025-09-10	2025-10-08	2025-11-05	2025-12-03	2025-12-31	2026-01-28	2026-02-25	2026-03-25	2026-04-22	2026-05-20	2026-06-17	2026-07-15	2026-08-12	2026-09-09	2026-10-07
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: G-quadruplex (3)
(3)
Basepair signature: cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW
Heat map statistics: Min 0.06 | Avg 0.10 | Max 0.18

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Coloring options: Nucleotide numbers

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