Motif IL_93401.1 Version IL_93401.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-7 | 1-8 | 2-7 | 3-4 | 3-5 | 3-6 | 4-5 | 4-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3JAM_068 | 3JAM | 0.4775 | 2 | 2 | SSU rRNA | A | 1343 | A | 1344 | A | 1347 | * | U | 1375 | U | 1376 | C | 1377 | U | 1378 | U | 1379 | ncWW | ncWW | cWW | cSH | ||||
| 2 | IL_4R0D_001 | 4R0D | 0.0000 | 1 | A | Group II catalytic intron | G | 339 | A | 340 | C | 342 | * | G | 10 | A | 11 | A | 12 | G | 13 | U | 14 | cWW | cWW | cWW | ntSW | ||||
| 3 | IL_4YAZ_005 | 4YAZ | 0.5690 | 1 | R | Cyclic di-GMP-I riboswitch | A | 4 | A | 6 | C | 7 | * | G | 77 | A | 78 | A | 79 | A | 80 | U | 81 | cWW | cWW | ntSH | cSW | cSH | |||
| 4 | IL_1FJG_045 | 1FJG | 0.6144 | 1 | A | SSU rRNA | G | 1124 | U | 1126 | G | 1127 | * | C | 1145 | A | 1146 | C | 1147 | U | 1148 | C | 1149 | cWW | ncWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAUA*UUCUU | 1 |
| GAAC*GAAGU | 1 |
| ACAC*GAAAU | 1 |
| GUUG*CACUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAU*UCU | 1 |
| AA*AAG | 1 |
| CA*AAA | 1 |
| UU*ACU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-R-R-cWW
- Heat map statistics
- Min 0.48 | Avg 0.43 | Max 0.63
Coloring options: