Motif IL_93568.1 Version IL_93568.1 of this group appears in releases 0.9 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_026 | 1FJG | 0.8717 | 2 | A | SSU rRNA | U | 605 | G | 606 | A | 609 | G | 610 | A | 611 | C | 612 | * | G | 628 | G | 629 | G | 630 | G | 631 | A | 632 | G | 633 | cWW | tSH | cWW | ||||
| 2 | IL_2ZJR_017 | 2ZJR | 0.4127 | 0 | X | LSU rRNA | U | 716 | G | 717 | A | 718 | A | 719 | A | 720 | C | 721 | * | G | 736 | C | 737 | G | 738 | G | 739 | A | 740 | G | 741 | cWW | ntSH | ntHS | tHS | ncWW | cWW | |
| 3 | IL_4GMA_004 | 4GMA | 0.0000 | 0 | Z | Adenosylcobalamin riboswitch | C | 97 | G | 98 | A | 99 | A | 100 | G | 101 | C | 102 | * | G | 138 | U | 139 | G | 140 | G | 141 | A | 142 | G | 143 | cWW | ntSH | ntHS | ntHS | ncWW | ||
| 4 | IL_4A1B_033 | 4A1B | 0.5531 | 0 | 1 | 26S RRNA | C | 794 | G | 795 | A | 796 | A | 797 | G | 798 | G | 799 | * | C | 781 | U | 782 | U | 783 | G | 784 | A | 785 | G | 786 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAGAC*GGGGAG | 1 |
| UGAAAC*GCGGAG | 1 |
| CGAAGC*GUGGAG | 1 |
| CGAAGG*CUUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAGA*GGGA | 1 |
| GAAA*CGGA | 1 |
| GAAG*UGGA | 1 |
| GAAG*UUGA | 1 |
Release history
| Release | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_93568.1 | Only in the parent motif |
|---|---|---|---|
| IL_92459.1 Compare | IL_2ZJR_017 | IL_1FJG_026, IL_4A1B_033, IL_4GMA_004 | IL_3U5F_038 |
| IL_30390.1 Compare | IL_4A1B_033 | IL_1FJG_026, IL_2ZJR_017, IL_4GMA_004 | |
| IL_15840.1 Compare | IL_1FJG_026 | IL_4A1B_033, IL_2ZJR_017, IL_4GMA_004 | IL_4A1B_030, IL_2AW7_066 |
Children motifs
| Child motif | Common motif instances | Only in IL_93568.1 | Only in the child motif |
|---|---|---|---|
| IL_93568.2 Compare | IL_1FJG_026, IL_4A1B_033, IL_4GMA_004 | IL_2ZJR_017 | IL_4IOA_017 |
- Annotations
- Basepair signature
- cWW-tSH-tHS-L-R-R-L-cWW
- Heat map statistics
- Min 0.41 | Avg 0.57 | Max 0.97
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