Motif IL_94403.5 Version IL_94403.5 of this group appears in releases 1.9 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 4-8 | 9-10 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1MZP_002 | 1MZP | 0.2973 | 2 | B | fragment of 23S rRNA | G | 6 | G | 8 | U | 9 | A | 10 | G | 11 | G | 12 | A | 13 | A | 15 | G | 16 | * | C | 49 | C | 50 | cWW | tWH | cWW |
2 | IL_3V2F_082 | 3V2F | 0.0000 | 2 | A | 23S Ribosomal RNA | G | 2110 | G | 2112 | U | 2113 | A | 2114 | G | 2115 | G | 2116 | A | 2117 | A | 2119 | G | 2120 | * | C | 2178 | C | 2179 | cWW | cWW | |
3 | IL_3UMY_002 | 3UMY | 0.5653 | 2 | B | LSU rRNA | G | 2110 | G | 2112 | U | 2113 | A | 2114 | G | 2115 | G | 2116 | A | 2117 | A | 2119 | G | 2120 | * | C | 2178 | C | 2179 | cWW | tWH | cWW |
4 | IL_4JRC_004 | 4JRC | 0.6030 | 1 | B | Distal Stem I region of the glyQS T box leader RNA | C | 37 | G | 39 | A | 40 | A | 41 | G | 42 | C | 43 | G | 44 | A | 45 | G | 46 | * | U | 68 | G | 69 | cWW | tWH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GCGUAGGAUAG*CC | 3 |
CCGAAGCGAG*UG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CGUAGGAUA* | 3 |
CGAAGCGA* | 1 |
Release history
Release | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|
Date | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_94403.5 | Only in the parent motif |
---|---|---|---|
IL_94403.4 Compare | IL_4JRC_004, IL_3UMY_002, IL_1MZP_002 | IL_3V2F_082 | |
IL_39674.1 Compare | IL_3V2F_082 | IL_4JRC_004, IL_3UMY_002, IL_1MZP_002 | IL_1KXK_003, IL_1S72_093, IL_3U5F_086 |
Children motifs
Child motif | Common motif instances | Only in IL_94403.5 | Only in the child motif |
---|---|---|---|
IL_94403.6 Compare | IL_4JRC_004, IL_3UMY_002, IL_1MZP_002 | IL_3V2F_082 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-L-tWH-L-L-L-cWW
- Heat map statistics
- Min 0.30 | Avg 0.39 | Max 0.63
Coloring options: