#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9break 10 111-114-89-10
1 IL_1MZP_0021MZP0.29732Bfragment of 23S rRNAG6G8U9A10G11G12A13A15G16*C49C50cWWtWHcWW
2 IL_3V2F_0823V2F0.00002A23S Ribosomal RNAG2110G2112U2113A2114G2115G2116A2117A2119G2120*C2178C2179cWWcWW
3 IL_3UMY_0023UMY0.56532B LSU rRNAG2110G2112U2113A2114G2115G2116A2117A2119G2120*C2178C2179cWWtWHcWW
4 IL_4JRC_0044JRC0.60301BDistal Stem I region of the glyQS T box leader RNAC37G39A40A41G42C43G44A45G46*U68G69cWWtWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCGUAGGAUAG*CC3
CCGAAGCGAG*UG1
Non-Watson-Crick part of the motif
SequenceCounts
CGUAGGAUA*3
CGAAGCGA*1

Release history

Release1.91.101.111.121.13
Date2013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 2 parentsExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_94403.5Only in the child motif
IL_94403.6
Compare
IL_4JRC_004, IL_3UMY_002, IL_1MZP_002IL_3V2F_082
Annotations
  • (4)
  • Basepair signature
    cWW-L-L-tWH-L-L-L-cWW
    Heat map statistics
    Min 0.30 | Avg 0.39 | Max 0.63
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