#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9break 10 111-114-89-10
1 IL_3UMY_0023UMY0.45812B LSU rRNAG2110G2112U2113A2114G2115G2116A2117A2119G2120*C2178C2179cWWtWHcWW
2 IL_4JRC_0044JRC0.00001BDistal Stem I region of the glyQS T box leader RNAC37G39A40A41G42C43G44A45G46*U68G69cWWtWHcWW
3 IL_1MZP_0021MZP0.59842Bfragment of 23S rRNAG6G8U9A10G11G12A13A15G16*C49C50cWWtWHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCGUAGGAUAG*CC2
CCGAAGCGAG*UG1
Non-Watson-Crick part of the motif
SequenceCounts
CGUAGGAUA*2
CGAAGCGA*1

Release history

Release1.141.151.17
Date2014-04-272014-06-202014-09-04
StatusUpdated, 1 parentExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_94403.6Only in the parent motif
IL_94403.5
Compare
IL_4JRC_004, IL_3UMY_002, IL_1MZP_002IL_3V2F_082

Children motifs

Child motifCommon motif instancesOnly in IL_94403.6Only in the child motif
IL_94403.7
Compare
IL_4JRC_004, IL_3UMY_002, IL_1MZP_002IL_4QCN_081
Annotations
  • (3)
  • Basepair signature
    cWW-L-L-tWH-L-L-L-cWW
    Heat map statistics
    Min 0.46 | Avg 0.38 | Max 0.63
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