#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-52-53-4
1 IL_4GMA_0014GMA0.73210ZAdenosylcobalamin riboswitchA7G8C9*G176U177ncWWcWW
2 IL_2XXA_0132XXA0.74900G SSRP RNAG68A69U70*G28C29cWWcWW
3 IL_3V2F_0553V2F0.59610A23S Ribosomal RNAG1448A1449G1450*C1462C1463cWWcWW
4 IL_3V2F_0323V2F0.66430A23S Ribosomal RNAU877A878G879*C898A899cWWcWW
5 IL_3U5H_1453U5H0.3310175S rRNAG49A51G52*C28C29cWWcWScWW
6 IL_2QBG_0722QBG0.36301B23S rRNAC1837G1839G1840*C1902G1903cWWtHScWW
7 IL_4A1B_0864A1B0.42361126S RRNAC2191A2193G2194*C2240G2241cWWcWW
8 IL_3V2F_0683V2F0.41571A23S Ribosomal RNAC1837G1839G1840*C1902G1903cWWcWW
9 IL_1S72_0661S720.36341Major groove outside cWW, minor groove, intercalation pocket (H)0 LSU rRNAC1893A1895G1896*C1943G1944cWWcWW
10 IL_4IOA_0664IOA0.39931Major groove outside cWW, minor groove, intercalation pocket (H)X LSU rRNAC1829G1831G1832*C1885G1886cWWcWW
11 IL_4IOA_1064IOA0.34661Y 5S rRNAG53C55G56*C32C33cWWntHScWW
12 IL_4BPP_0404BPP0.37111A18S RRNAG785A787U788*A730C731cWWncWScWW
13 IL_2AW7_0072AW70.22441A16S ribosomal RNAU70A72C73*G97A98cWWcWScWW
14 IL_3Q1Q_0033Q1Q0.00002BRNase P RNAG103A106G107*C209C210cWWcWScWW
15 IL_2AW7_0462AW70.37842A16S ribosomal RNAG993A996U997*A1044C1045cWWcWScWW
16 IL_1FJG_0391FJG0.40202Minor groove platform (H)A SSU rRNAG993A996U997*A1044C1045cWWcWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCGG*CG3
CCAG*CG2
GACAU*AC2
AGC*GU1
GAU*GC1
GAG*CC1
UAG*CA1
GUAG*CC1
GUCG*CC1
GAAU*AC1
UAAC*GA1
GACAG*CC1
Non-Watson-Crick part of the motif
SequenceCounts
A*3
CG*3
ACA*3
CA*2
AA*2
G*1
UA*1
UC*1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_94430.5Only in the child motif
IL_94430.6
Compare
IL_1FJG_039, IL_4GMA_001, IL_2QBG_072, IL_2AW7_046, IL_4IOA_066, IL_4IOA_106, IL_3Q1Q_003, IL_4A1B_086, IL_2XXA_013, IL_1S72_066, IL_2AW7_007, IL_4BPP_040, IL_3U5H_145IL_3V2F_032, IL_3V2F_068, IL_3V2F_055IL_4NVV_071
Annotations
  • (13)
  • Major groove outside cWW, minor groove, intercalation pocket (H) (2)
  • Minor groove platform (H) (1)
  • Basepair signature
    cWW-cWS-cWW
    Heat map statistics
    Min 0.14 | Avg 0.53 | Max 0.95
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