Motif IL_94431.3 Version IL_94431.3 of this group appears in releases 3.15 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-2 | 1-6 | 3-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_374 | 5TBW | 0.4852 | 0 | Minor groove platform | AS | 5S rRNA | G | 49 | U | 50 | A | 51 | G | 52 | * | C | 28 | C | 29 | cWW | cWS | cWW | |
| 2 | IL_4LFB_037 | 4LFB | 0.4055 | 2 | Minor groove platform | A | SSU rRNA | U | 1380 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | cWW | cWS | cWW | |
| 3 | IL_5J7L_041 | 5J7L | 0.3878 | 2 | Minor groove platform | AA | SSU rRNA | U | 1380 | C | 1382 | C | 1383 | C | 1384 | * | G | 933 | A | 935 | ncSH | cWW | cWS | cWW |
| 4 | IL_4IOA_106 | 4IOA | 0.3318 | 0 | Y | 5S rRNA | G | 53 | U | 54 | C | 55 | G | 56 | * | C | 32 | C | 33 | cWW | ntHS | cWW | ||
| 5 | IL_3IWN_005 | 3IWN | 0.0000 | 0 | Minor groove platform | A | C-di-GMP riboswitch | A | 51 | A | 52 | A | 53 | C | 54 | * | G | 71 | U | 72 | ncSH | cWW | ncWS | cWW |
| 6 | IL_3MXH_005 | 3MXH | 0.1558 | 0 | Minor groove platform | R | c-di-GMP riboswitch | A | 61 | A | 62 | A | 63 | C | 64 | * | G | 76 | U | 77 | ncSH | cWW | cWW | |
| 7 | IL_4LFB_049 | 4LFB | 0.3320 | 1 | Minor groove platform | A | SSU rRNA | C | 1128 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | cWW | ncWS | ncWW | |
| 8 | IL_5J7L_052 | 5J7L | 0.3644 | 0 | Minor groove platform | AA | SSU rRNA | C | 1129 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | cSH | cWW | cWW | |
| 9 | IL_5J7L_007 | 5J7L | 0.3791 | 0 | Minor groove platform | AA | SSU rRNA | U | 70 | A | 71 | A | 72 | C | 73 | * | G | 97 | A | 98 | ncSH | cWW | ncWS | cWW |
| 10 | IL_4LFB_039 | 4LFB | 0.5026 | 1 | Minor groove platform | A | SSU rRNA | G | 993 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW | |
| 11 | IL_5J7L_043 | 5J7L | 0.5402 | 1 | Minor groove platform | AA | SSU rRNA | G | 993 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCC*GCA | 2 |
| AAAC*GU | 2 |
| GACAU*AC | 2 |
| GUAG*CC | 1 |
| GUCG*CC | 1 |
| CCAGC*GG | 1 |
| CAGC*GG | 1 |
| UAAC*GA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 3 |
| UCC*C | 2 |
| ACA* | 2 |
| UA* | 1 |
| UC* | 1 |
| CAG* | 1 |
| AG* | 1 |
Release history
| Release | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (10)
- (1)
- Basepair signature
- cWW-cSH-cWS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.40 | Max 0.64
Coloring options: