Motif IL_94519.1 Version IL_94519.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_074 | 4A1B | 0.3304 | 1 | 1 | 26S RRNA | U | 1718 | U | 1719 | A | 1720 | A | 1721 | C | 1722 | * | G | 1772 | G | 1773 | C | 1774 | A | 1775 | A | 1777 | cWW | tHH | tHS | cWW | ||
| 2 | IL_4CUV_078 | 4CUV | 0.0000 | 1 | 1 | 25S RRNA | U | 1694 | U | 1695 | A | 1696 | A | 1697 | C | 1698 | * | G | 1747 | G | 1748 | A | 1749 | A | 1750 | A | 1752 | cWW | tWH | ntHH | tHS | cWW | |
| 3 | IL_3U5H_079 | 3U5H | 0.0926 | 1 | 5 | 25S rRNA | U | 1694 | U | 1695 | A | 1696 | A | 1697 | C | 1698 | * | G | 1747 | G | 1748 | A | 1749 | A | 1750 | A | 1752 | cWW | tWH | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAC*GGAAGA | 2 |
| UUAAC*GGCAGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GAAG | 2 |
| UAA*GCAG | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_94519.1 | Only in the parent motif |
|---|---|---|---|
| IL_59529.1 Compare | IL_3U5H_079 | IL_4A1B_074, IL_4CUV_078 | |
| IL_80093.1 Compare | IL_4A1B_074 | IL_3U5H_079, IL_4CUV_078 | IL_1S72_056 |
Children motifs
| Child motif | Common motif instances | Only in IL_94519.1 | Only in the child motif |
|---|---|---|---|
| IL_94519.2 Compare | IL_4A1B_074, IL_3U5H_079, IL_4CUV_078 | IL_1VX6_077 |
- Annotations
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.17 | Max 0.33
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