Motif IL_94519.2 Version IL_94519.2 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_074 | 4A1B | 0.3337 | 1 | 1 | LSU rRNA | U | 1718 | U | 1719 | A | 1720 | A | 1721 | C | 1722 | * | G | 1772 | G | 1773 | C | 1774 | A | 1775 | A | 1777 | cWW | tHH | tHS | cWW | |
| 2 | IL_4CUV_078 | 4CUV | 0.0926 | 1 | 1 | LSU rRNA | U | 1694 | U | 1695 | A | 1696 | A | 1697 | C | 1698 | * | G | 1747 | G | 1748 | A | 1749 | A | 1750 | A | 1752 | cWW | tWH | ntHH | tHS | cWW |
| 3 | IL_3U5H_079 | 3U5H | 0.0000 | 1 | 5 | LSU rRNA | U | 1694 | U | 1695 | A | 1696 | A | 1697 | C | 1698 | * | G | 1747 | G | 1748 | A | 1749 | A | 1750 | A | 1752 | cWW | tWH | tHH | tHS | cWW |
| 4 | IL_1VX6_077 | 1VX6 | 0.3539 | 1 | A | LSU rRNA | U | 1849 | U | 1850 | A | 1851 | C | 1852 | C | 1853 | * | G | 1967 | C | 1968 | A | 1969 | A | 1970 | A | 1972 | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAC*GGAAGA | 2 |
| UUAAC*GGCAGA | 1 |
| UUACC*GCAAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*GAAG | 2 |
| UAA*GCAG | 1 |
| UAC*CAAU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_94519.2 | Only in the parent motif |
|---|---|---|---|
| IL_94519.1 Compare | IL_4A1B_074, IL_3U5H_079, IL_4CUV_078 | IL_1VX6_077 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.24 | Max 0.45
Coloring options: