Motif IL_95150.4 Version IL_95150.4 of this group appears in releases 1.5 to 1.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3OWZ_002 | 3OWZ | 0.0615 | 1 | A | Domain II of glycine riboswitch | C | 31 | G | 32 | A | 34 | G | 35 | * | C | 70 | A | 71 | G | 72 | cWW | tHS | cWW | |
| 2 | IL_3OWZ_006 | 3OWZ | 0.0000 | 1 | B | Domain II of glycine riboswitch | C | 31 | G | 32 | A | 34 | G | 35 | * | C | 70 | A | 71 | G | 72 | cWW | tHS | cWW | |
| 3 | IL_1FJG_063 | 1FJG | 0.9584 | 2 | A | SSU rRNA | C | 1440 | G | 1441 | G | 1442 | G | 1447 | * | C | 1459 | A | 1460 | G | 1461 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAG*CAG | 2 |
| CGGGAG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*A | 2 |
| GGGA*A | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 |
|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_95150.4 | Only in the parent motif |
|---|---|---|---|
| IL_95150.3 Compare | IL_3OWZ_006, IL_3OWZ_002 | IL_1FJG_063 | IL_1FJG_003 |
| IL_54420.1 Compare | IL_1FJG_063 | IL_3OWZ_006, IL_3OWZ_002 | IL_2XZM_067, IL_2XZM_073, IL_3U5F_068, IL_4GMA_007, IL_4GXY_009 |
Children motifs
| Child motif | Common motif instances | Only in IL_95150.4 | Only in the child motif |
|---|---|---|---|
| IL_95150.5 Compare | IL_3OWZ_006, IL_3OWZ_002 | IL_1FJG_063 | |
| IL_46034.2 Compare | IL_1FJG_063 | IL_3OWZ_006, IL_3OWZ_002 | IL_3U5F_021, IL_4BPP_019 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-tHS-cWW
- Heat map statistics
- Min 0.06 | Avg 0.44 | Max 0.97
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