Motif IL_95652.3 Version IL_95652.3 of this group appears in releases 1.5 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-5 | 5-11 | 6-10 | 8-9 | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4BPP_052 | 4BPP | 0.1180 | 0 | A | 18S RRNA | G | 1083 | A | 1084 | A | 1085 | G | 1086 | U | 1087 | A | 1088 | U | 1089 | G | 1090 | * | U | 1102 | G | 1103 | A | 1104 | A | 1105 | A | 1106 | C | 1107 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
2 | IL_3U5F_057 | 3U5F | 0.1059 | 0 | 6 | 18S rRNA | G | 1111 | G | 1112 | A | 1113 | G | 1114 | U | 1115 | A | 1116 | U | 1117 | G | 1118 | * | U | 1129 | G | 1130 | A | 1131 | A | 1132 | A | 1133 | C | 1134 | cWW | tSH | tHH | cSH | tWH | tHS | cWW | |
3 | IL_1FJG_034 | 1FJG | 0.0000 | 0 | 8x6 Sarcin-Ricin with inserted Y; G-bulge (H) | A | SSU rRNA | G | 887 | G | 888 | A | 889 | G | 890 | U | 891 | A | 892 | C | 893 | G | 894 | * | U | 905 | G | 906 | A | 907 | A | 908 | A | 909 | C | 910 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
4 | IL_2AW7_041 | 2AW7 | 0.1050 | 0 | A | 16S ribosomal RNA | G | 887 | G | 888 | A | 889 | G | 890 | U | 891 | A | 892 | C | 893 | G | 894 | * | U | 905 | A | 906 | A | 907 | A | 908 | A | 909 | C | 910 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAAGUAUG*UGAAAC | 1 |
GGAGUAUG*UGAAAC | 1 |
GGAGUACG*UGAAAC | 1 |
GGAGUACG*UAAAAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAGUAU*GAAA | 1 |
GAGUAU*GAAA | 1 |
GAGUAC*GAAA | 1 |
GAGUAC*AAAA | 1 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_95652.3 | Only in the parent motif |
---|---|---|---|
IL_95652.2 Compare | IL_2AW7_041, IL_3U5F_057, IL_1FJG_034 | IL_4BPP_052 |
Children motifs
Child motif | Common motif instances | Only in IL_95652.3 | Only in the child motif |
---|---|---|---|
IL_95652.4 Compare | IL_2AW7_041, IL_3U5F_057, IL_4BPP_052, IL_1FJG_034 | IL_4CUX_055 |
- Annotations
-
- (3)
- 8x6 Sarcin-Ricin with inserted Y; G-bulge (H) (1)
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.09 | Max 0.14
Coloring options: