#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10 11 12 13 141-142-133-124-55-116-108-9
1 IL_4BPP_0524BPP0.11800A18S RRNAG1083A1084A1085G1086U1087A1088U1089G1090*U1102G1103A1104A1105A1106C1107cWWtSHtHHcSHtWHtHScWW
2 IL_3U5F_0573U5F0.10590618S rRNAG1111G1112A1113G1114U1115A1116U1117G1118*U1129G1130A1131A1132A1133C1134cWWtSHtHHcSHtWHtHScWW
3 IL_1FJG_0341FJG0.000008x6 Sarcin-Ricin with inserted Y; G-bulge (H)A SSU rRNAG887G888A889G890U891A892C893G894*U905G906A907A908A909C910cWWtSHtHHcSHtWHtHScWW
4 IL_2AW7_0412AW70.10500A16S ribosomal RNAG887G888A889G890U891A892C893G894*U905A906A907A908A909C910cWWtSHtHHcSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAGUAUG*UGAAAC1
GGAGUAUG*UGAAAC1
GGAGUACG*UGAAAC1
GGAGUACG*UAAAAC1
Non-Watson-Crick part of the motif
SequenceCounts
AAGUAU*GAAA1
GAGUAU*GAAA1
GAGUAC*GAAA1
GAGUAC*AAAA1

Release history

Release1.51.61.71.81.91.101.111.121.131.14
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-27
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_95652.3Only in the parent motif
IL_95652.2
Compare
IL_2AW7_041, IL_3U5F_057, IL_1FJG_034IL_4BPP_052

Children motifs

Child motifCommon motif instancesOnly in IL_95652.3Only in the child motif
IL_95652.4
Compare
IL_2AW7_041, IL_3U5F_057, IL_4BPP_052, IL_1FJG_034IL_4CUX_055
Annotations
  • (3)
  • 8x6 Sarcin-Ricin with inserted Y; G-bulge (H) (1)
  • Basepair signature
    cWW-tSH-tHH-cSH-tWH-tHS-L-cWW
    Heat map statistics
    Min 0.10 | Avg 0.09 | Max 0.14
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.1956 s