Motif IL_97057.4 Version IL_97057.4 of this group appears in releases 1.14 to 1.15
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 5-8 | 6-7 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2QBG_105 | 2QBG | 0.1852 | 1 | B | 23S rRNA | G | 2737 | A | 2738 | U | 2739 | A | 2740 | A | 2741 | G | 2742 | * | C | 2762 | G | 2763 | A | 2764 | A | 2766 | C | 2767 | cWW | cwW | tWH | tHS | cWW | |
2 | IL_4A1B_054 | 4A1B | 0.1810 | 1 | 1 | 26S RRNA | G | 1193 | A | 1194 | U | 1195 | A | 1196 | A | 1197 | G | 1198 | * | C | 1355 | G | 1356 | A | 1357 | A | 1359 | C | 1360 | cWW | cwW | tWH | tHS | cWW | |
3 | IL_1VW3_090 | 1VW3 | 0.0000 | 1 | A | 21S ribosomal RNA | A | 3073 | A | 3074 | U | 3075 | A | 3076 | A | 3077 | A | 3078 | * | U | 3099 | G | 3100 | A | 3101 | G | 3103 | U | 3104 | cWW | cWW | tWH | tHS | cWW | |
4 | IL_4NVV_103 | 4NVV | 0.1355 | 1 | A | 23S Ribosomal RNA | G | 2750 | A | 2751 | U | 2752 | A | 2753 | A | 2754 | C | 2755 | * | G | 2775 | G | 2776 | A | 2777 | G | 2779 | C | 2780 | cWW | cWW | tWH | tHS | cWW | |
5 | IL_4IOA_100 | 4IOA | 0.1437 | 1 | UAA/GAN with extra cWW (H) | X | LSU rRNA | G | 2717 | A | 2718 | U | 2719 | A | 2720 | A | 2721 | C | 2722 | * | G | 2742 | G | 2743 | A | 2744 | G | 2746 | C | 2747 | cWW | cWW | tWH | tHS | cWW |
6 | IL_1S72_094 | 1S72 | 0.1724 | 1 | UAA/GAN with extra cWW (H) | 0 | LSU rRNA | G | 2772 | G | 2773 | U | 2774 | A | 2775 | A | 2776 | G | 2777 | * | C | 2797 | G | 2798 | A | 2799 | A | 2801 | C | 2802 | cWW | cWW | tWH | tHS | cWW |
7 | IL_1S72_019 | 1S72 | 0.4435 | 0 | 0 | LSU rRNA | A | 562 | C | 563 | G | 564 | A | 565 | A | 566 | U | 567 | * | A | 591 | G | 592 | A | 593 | C | 594 | U | 595 | cWW | cWB | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAUAAC*GGAAGC | 2 |
GAUAAG*CGAAAC | 1 |
GAUAAG*CGAUAC | 1 |
AAUAAA*UGAAGU | 1 |
GGUAAG*CGAAAC | 1 |
ACGAAU*AGACU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AUAA*GAAG | 3 |
AUAA*GAAA | 1 |
AUAA*GAUA | 1 |
GUAA*GAAA | 1 |
CGAA*GAC | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_97057.4 | Only in the parent motif |
---|---|---|---|
IL_97057.3 Compare | IL_1S72_019, IL_2QBG_105, IL_4IOA_100, IL_1S72_094, IL_4A1B_054 | IL_4NVV_103, IL_1VW3_090 | IL_3V2F_103 |
Children motifs
Child motif | Common motif instances | Only in IL_97057.4 | Only in the child motif |
---|---|---|---|
IL_92122.1 Compare | IL_1S72_019, IL_2QBG_105, IL_1VW3_090, IL_1S72_094, IL_4IOA_100, IL_4A1B_054 | IL_4NVV_103 | IL_1VWW_054, IL_1VX6_056, IL_4QCN_104, IL_1VX6_127 |
- Annotations
-
- (5)
- UAA/GAN with extra cWW (H) (2)
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.23 | Max 0.52
Coloring options: