#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 111-112-103-95-86-7
1 IL_2QBG_1052QBG0.18521B23S rRNAG2737A2738U2739A2740A2741G2742*C2762G2763A2764A2766C2767cWWcwWtWHtHScWW
2 IL_4A1B_0544A1B0.18101126S RRNAG1193A1194U1195A1196A1197G1198*C1355G1356A1357A1359C1360cWWcwWtWHtHScWW
3 IL_1VW3_0901VW30.00001A21S ribosomal RNAA3073A3074U3075A3076A3077A3078*U3099G3100A3101G3103U3104cWWcWWtWHtHScWW
4 IL_4NVV_1034NVV0.13551A23S Ribosomal RNAG2750A2751U2752A2753A2754C2755*G2775G2776A2777G2779C2780cWWcWWtWHtHScWW
5 IL_4IOA_1004IOA0.14371UAA/GAN with extra cWW (H)X LSU rRNAG2717A2718U2719A2720A2721C2722*G2742G2743A2744G2746C2747cWWcWWtWHtHScWW
6 IL_1S72_0941S720.17241UAA/GAN with extra cWW (H)0 LSU rRNAG2772G2773U2774A2775A2776G2777*C2797G2798A2799A2801C2802cWWcWWtWHtHScWW
7 IL_1S72_0191S720.443500 LSU rRNAA562C563G564A565A566U567*A591G592A593C594U595cWWcWBtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUAAC*GGAAGC2
GAUAAG*CGAAAC1
GAUAAG*CGAUAC1
AAUAAA*UGAAGU1
GGUAAG*CGAAAC1
ACGAAU*AGACU1
Non-Watson-Crick part of the motif
SequenceCounts
AUAA*GAAG3
AUAA*GAAA1
AUAA*GAUA1
GUAA*GAAA1
CGAA*GAC1

Release history

Release1.141.15
Date2014-04-272014-06-20
StatusUpdated, 1 parentExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_97057.4Only in the parent motif
IL_97057.3
Compare
IL_1S72_019, IL_2QBG_105, IL_4IOA_100, IL_1S72_094, IL_4A1B_054IL_4NVV_103, IL_1VW3_090IL_3V2F_103

Children motifs

Child motifCommon motif instancesOnly in IL_97057.4Only in the child motif
IL_92122.1
Compare
IL_1S72_019, IL_2QBG_105, IL_1VW3_090, IL_1S72_094, IL_4IOA_100, IL_4A1B_054IL_4NVV_103IL_1VWW_054, IL_1VX6_056, IL_4QCN_104, IL_1VX6_127
Annotations
  • (5)
  • UAA/GAN with extra cWW (H) (2)
  • Basepair signature
    cWW-cWW-tWH-L-tHS-cWW
    Heat map statistics
    Min 0.07 | Avg 0.23 | Max 0.52
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