Motif IL_98421.2 Version IL_98421.2 of this group appears in releases 0.9 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-6 | 3-7 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2XZM_022 | 2XZM | 0.7445 | 0 | A | 18S RRNA | C | 435 | C | 436 | A | 437 | A | 438 | U | 439 | * | A | 452 | G | 453 | ncSH | cWW | ntWH | cWS | cWW | ||
| 2 | IL_1FJG_013 | 1FJG | 0.0000 | 0 | A | SSU rRNA | U | 304 | G | 305 | G | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | ntHS | cWW | ||||
| 3 | IL_2AW7_016 | 2AW7 | 0.3565 | 0 | A | 16S ribosomal RNA | U | 304 | G | 305 | A | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAU*AG | 1 |
| UGGCC*GG | 1 |
| UGACC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA* | 1 |
| GGC* | 1 |
| GAC* | 1 |
Release history
| Release | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_98421.2 | Only in the parent motif |
|---|---|---|---|
| IL_98421.1 Compare | IL_1FJG_013, IL_2AW7_016 | IL_2XZM_022 | IL_3U5H_123 |
| IL_62352.1 Compare | IL_2XZM_022 | IL_1FJG_013, IL_2AW7_016 |
Children motifs
| Child motif | Common motif instances | Only in IL_98421.2 | Only in the child motif |
|---|---|---|---|
| IL_98421.3 Compare | IL_2AW7_016, IL_1FJG_013 | IL_2XZM_022 | IL_3U5H_123 |
| IL_21221.1 Compare | IL_2XZM_022 | IL_2AW7_016, IL_1FJG_013 |
- Annotations
- Basepair signature
- cWW-L-L-L-cWW
- Heat map statistics
- Min 0.36 | Avg 0.44 | Max 0.88
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