Motif IL_98591.2 Version IL_98591.2 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-4 | 1-13 | 2-11 | 3-10 | 3-12 | 4-9 | 5-8 | 6-7 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_065 | 1S72 | 0.2380 | 3 | Kink-turn related (H) | 0 | LSU rRNA | C | 1854 | G | 1855 | C | 1856 | A | 1858 | A | 1859 | U | 1860 | * | A | 1869 | C | 1870 | U | 1871 | G | 1873 | U | 1874 | A | 1875 | G | 1877 | cSs | cWW | tSs | tWW | tHH | tHH | ncWW | cWW |
| 2 | IL_3V2F_067 | 3V2F | 0.0000 | 3 | A | LSU rRNA | U | 1798 | G | 1799 | C | 1800 | A | 1802 | A | 1803 | C | 1804 | * | G | 1813 | G | 1814 | A | 1815 | G | 1817 | U | 1818 | A | 1819 | A | 1821 | cSs | cWW | tSs | tWW | tHH | tHH | tHS | cWW | |
| 3 | IL_2QBG_071 | 2QBG | 0.0912 | 3 | B | LSU rRNA | U | 1798 | G | 1799 | C | 1800 | A | 1802 | A | 1803 | C | 1804 | * | G | 1813 | G | 1814 | A | 1815 | G | 1817 | U | 1818 | A | 1819 | A | 1821 | cSs | cWW | ntSs | tWW | tHH | tHH | tHS | cWW | |
| 4 | IL_2ZJR_066 | 2ZJR | 0.1181 | 3 | Kink-turn related (H) | X | LSU rRNA | U | 1789 | G | 1790 | C | 1791 | A | 1793 | A | 1794 | C | 1795 | * | G | 1805 | G | 1806 | A | 1807 | G | 1809 | U | 1810 | A | 1811 | A | 1813 | ncSs | cWW | tWW | tHH | ntHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAAAU*ACUCGUACG | 1 |
| UGCGAAC*GGAGGUAUA | 1 |
| UGCAAAC*GGACGUAUA | 1 |
| UGCCAAC*GGACGUAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAAA*CUCGUAC | 1 |
| GCGAA*GAGGUAU | 1 |
| GCAAA*GACGUAU | 1 |
| GCCAA*GACGUAU | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_98591.2 | Only in the parent motif |
|---|---|---|---|
| IL_98591.1 Compare | IL_2ZJR_066, IL_2QBG_071, IL_1S72_065 | IL_3V2F_067 | IL_3UXR_067 |
Children motifs
| Child motif | Common motif instances | Only in IL_98591.2 | Only in the child motif |
|---|---|---|---|
| IL_98591.3 Compare | IL_2QBG_071, IL_1S72_065, IL_3V2F_067 | IL_2ZJR_066 | IL_4IOA_065 |
- Annotations
-
- Kink-turn related (H) (2)
- (2)
- Basepair signature
- cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.14 | Max 0.27
Coloring options: