#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_7JJU_0037JJU0.50173B PLRV_xrRNAU6C9*G36A38cWWcWW
2 IL_7JJU_0017JJU0.49383A PLRV_xrRNAU6C9*G36A38cWWcWW
3 IL_7VTI_0037VTI0.22452BcrRNAU27U30*A9G10cWWcWW
4 IL_5TBW_5035TBW0.254421 LSU rRNAU1819C1822*G1623G1624ncWWcWW
5 IL_8C3A_4838C3A0.234621 LSU rRNAU1815C1818*G1619G1620ncWWcWW
6 IL_4LFB_0054LFB0.18482Multiple bulged basesA SSU rRNAC63G66*C103G104cWWcWW
7 IL_5J7L_0055J7L0.17292Multiple bulged basesAA SSU rRNAC63A66*U103G104cWWcWW
8 IL_6CZR_1176CZR0.30372Multiple bulged bases1a SSU rRNAC64G67*C97G98cWWcWW
9 IL_4V9F_0214V9F0.18512Multiple bulged bases0 LSU rRNAC699G702*C726G727cWWcWW
10 IL_1NTA_0021NTA0.21415Intercalation pocketA+BRNA (22-mer) + RNA (18-mer)C7G13*C113G114cWWcWW
11 IL_4YAZ_0084YAZ0.20122Multiple bulged basesRCyclic di-GMP-I riboswitchC64C67*G51G52cWWcWW
12 IL_4YAZ_0074YAZ0.00002Multiple bulged basesRCyclic di-GMP-I riboswitchU47G50*C68G69cWWcWW
13 IL_5XTM_0045XTM0.25291Basepair outside cWW, intercalation pocketDRNA (47-MER)U3U5*A44G45cWWcWW
14 IL_5DCV_0055DCV0.34821Basepair outside cWW, intercalation pocketDRNA (47-MER)U3U5*A48G49cWWcWW
15 IL_1U6B_0101U6B0.46151Basepair outside cWW, intercalation pocketB197-MERU160U162*A150G151cWWcWW
16 IL_5VCI_0045VCI0.44411Basepair outside cWW, intercalation pocketB+ARNA (12-mer)U2U4*A11G12cWWcWW
17 IL_4PCJ_0044PCJ0.47911Basepair outside cWW, intercalation pocketAtrCUG-3('5)U25U27*A11G12cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAU*AG5
UAGC*GAA2
UUUC*GG2
CGUG*CG2
UGAU*AG1
CGAA*UG1
CAUG*CG1
CAUUUGG*CG1
CAGC*GG1
UAAG*CG1
Non-Watson-Crick part of the motif
SequenceCounts
A*5
AG*A2
GA*2
UU*2
GU*2
AU*1
AUUUG*1
AG*1
AA*1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Multiple bulged bases (6)
  • Basepair outside cWW, intercalation pocket (5)
  • (5)
  • Intercalation pocket (1)
  • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.38 | Max 0.94
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