Motif IL_99515.1 Version IL_99515.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-4 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_085 | 3U5H | 0.9204 | 5 | 5 | 25S rRNA | A | 1901 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW | ||
| 2 | IL_2ZJR_092 | 2ZJR | 0.3836 | 1 | Major groove platform with intercalation (H) | X | LSU rRNA | U | 2501 | G | 2502 | * | C | 2519 | A | 2520 | G | 2522 | tHS | cWW | cWW |
| 3 | IL_3UXR_097 | 3UXR | 0.3380 | 1 | A | 23S ribosomal RNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 4 | IL_1S72_087 | 1S72 | 0.1777 | 1 | Major groove platform with intercalation (H) | 0 | LSU rRNA | U | 2557 | G | 2558 | * | C | 2575 | A | 2576 | G | 2578 | ntHS | cWW | cWW |
| 5 | IL_3U5H_117 | 3U5H | 0.1019 | 1 | 5 | 25S rRNA | U | 2891 | A | 2892 | * | U | 2909 | A | 2910 | G | 2912 | tHS | cWW | cWW | |
| 6 | IL_2QBG_098 | 2QBG | 0.0000 | 1 | B | 23S rRNA | U | 2522 | G | 2523 | * | C | 2540 | A | 2541 | G | 2543 | ntHS | cWW | cWW | |
| 7 | IL_4A1B_114 | 4A1B | 0.0930 | 1 | 1 | 26S RRNA | U | 2879 | U | 2880 | * | A | 2897 | A | 2898 | G | 2900 | ntHS | cWW | cWW | |
| 8 | IL_3U5H_110 | 3U5H | 0.8341 | 0 | 5 | 25S rRNA | U | 2862 | G | 2863 | * | U | 2826 | U | 2827 | G | 2828 | cWW | cWW | ||
| 9 | IL_1S72_062 | 1S72 | 0.8624 | 5 | Intercalated tWH (H) | 0 | LSU rRNA | A | 1747 | G | 1752 | * | C | 2031 | U | 2032 | U | 2034 | cWW | cWW | |
| 10 | IL_4A1B_081 | 4A1B | 0.8885 | 5 | 1 | 26S RRNA | A | 1925 | G | 1930 | * | C | 2328 | U | 2329 | U | 2331 | cWW | cWW | ||
| 11 | IL_2ZJR_023 | 2ZJR | 0.8594 | 0 | X | LSU rRNA | U | 860 | G | 861 | * | U | 942 | U | 943 | A | 944 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CAAG | 4 |
| AGUCGG*CUGU | 2 |
| UA*UAAG | 1 |
| UU*AACG | 1 |
| UG*UUG | 1 |
| AUUCGG*CUGU | 1 |
| UG*UUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 5 |
| GUCG*UG | 2 |
| *U | 2 |
| *AC | 1 |
| UUCG*UG | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_99515.1 | Only in the parent motif |
|---|---|---|---|
| IL_61831.1 Compare | IL_2ZJR_092, IL_1S72_087, IL_2QBG_098 | IL_2ZJR_023, IL_3U5H_117, IL_3U5H_110, IL_3U5H_085, IL_4A1B_114, IL_1S72_062, IL_4A1B_081, IL_3UXR_097 | IL_2AW7_016, IL_3PYO_087 |
| IL_87608.1 Compare | IL_2ZJR_023 | IL_4A1B_114, IL_2ZJR_092, IL_2QBG_098, IL_3U5H_110, IL_3U5H_085, IL_1S72_087, IL_3U5H_117, IL_1S72_062, IL_4A1B_081, IL_3UXR_097 | IL_3O58_135, IL_3O58_124, IL_3O30_018, IL_1FJG_012, IL_2QWY_005 |
| IL_95015.1 Compare | IL_1S72_062 | IL_2ZJR_023, IL_4A1B_114, IL_3U5H_110, IL_2QBG_098, IL_2ZJR_092, IL_3U5H_085, IL_1S72_087, IL_3U5H_117, IL_4A1B_081, IL_3UXR_097 | IL_3LOA_003, IL_3O58_082, IL_2QBG_065, IL_3O30_064, IL_2QEK_002, IL_2XZM_064, IL_2ZJR_063, IL_3O58_095 |
Children motifs
- Annotations
-
- (8)
- Major groove platform with intercalation (H) (2)
- Intercalated tWH (H) (1)
- Basepair signature
- 05_tHS,cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.58 | Max 0.99
Coloring options: