Motif IL_99893.1 Version IL_99893.1 of this group appears in releases 4.0 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-6 | 2-10 | 3-13 | 4-12 | 5-11 | 6-10 | 7-8 | 9-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8GLP_334 | 8GLP | 0.0000 | 3 | S2 | SSU rRNA | U | 1492 | C | 1493 | G | 1495 | U | 1496 | A | 1498 | U | 1499 | G | 1500 | * | U | 1329 | G | 1330 | A | 1332 | U | 1333 | G | 1334 | G | 1335 | cWW | tWH | ntHS | ncBW | cWW | ncSW | cWW | cWH | |
| 2 | IL_8P9A_439 | 8P9A | 0.1237 | 3 | sR | SSU rRNA | U | 1430 | C | 1431 | G | 1433 | U | 1434 | A | 1436 | U | 1437 | G | 1438 | * | U | 1272 | G | 1273 | A | 1275 | U | 1276 | G | 1277 | G | 1278 | cWW | ntSW | tWH | tHS | ncWWa | cWW | ncSW | cWW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUGUGAUG*UGCAUGG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGUGAU*GCAUG | 2 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Heat map statistics
- Min 0.12 | Avg 0.06 | Max 0.12
Coloring options: