Motif J3_00458.1 Version J3_00458.1 of this group appears in releases 3.54 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 1-20 | 3-16 | 4-10 | 4-15 | 5-9 | 7-13 | 8-13 | 10-11 | 13-14 | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_7KVT_001 | 7KVT | 0.0000 | 2 | B | Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions | U | 38 | U | 39 | A | 40 | G | 41 | G | 42 | A | 43 | U | 44 | A | 45 | G | 46 | G | 47 | * | C | 72 | G | 73 | G | 74 | * | C | 10 | A | 12 | G | 13 | G | 14 | U | 15 | G | 16 | G | 18 | cWW | csS | tWH | cSs | tHW | ntHS | ncsS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGGUGAG*UUAGGAUAGG*CGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGGUGA*UAGGAUAG*G | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-F-F-cSS-F-tWH-cSS-F-tHW-F-F-cWW-F-F-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: