Motif J3_03192.1 Version J3_03192.1 of this group appears in releases 4.0 to 4.5

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8		9		10		11	break		12		13		14		15	1-15	2-4	2-10	3-8	4-5	6-7	9-10	11-12
1	J3_8CRE_086	8CRE	0.1921	2	CM	SSU rRNA	C	1456	A	1457	C	1458	G	1460	*	C	1520	G	1521	U	1522	G	1523	C	1524	U	1525	G	1527	*	C	1558	G	1559	A	1560	G	1561	cWW	ncsS	tHW		cWW	cSH	ncSH	cWW
2	J3_8GLP_022	8GLP	0.1702	2	S2	SSU rRNA	C	1532	A	1533	C	1534	G	1536	*	C	1597	G	1598	U	1599	G	1600	A	1601	U	1602	G	1604	*	C	1635	G	1636	A	1637	G	1638	cWW	csS	tHW		cWW	cSH	cSH	cWW
3	J3_8B0X_013	8B0X	0.1282	2	A	SSU rRNA	C	1237	A	1238	A	1239	G	1241	*	C	1296	G	1297	U	1298	A	1299	G	1300	U	1301	C	1303	*	G	1334	U	1335	C	1336	G	1337	cWW	ncsS	tHW	tHW	cWW	cSH	cSH	cWW
4	J3_4LFB_009	4LFB	0.0000	2	A	SSU rRNA	C	1237	A	1238	A	1239	G	1241	*	C	1296	C	1297	C	1298	A	1299	G	1300	U	1301	C	1303	*	G	1334	C	1335	C	1336	G	1337	cWW	ncsS	tHW	ntHH	cWW	cSH	ncSH	cWW
5	J3_8P9A_084	8P9A	0.2367	2	sR	SSU rRNA	C	1470	A	1471	C	1472	G	1474	*	C	1533	G	1534	U	1535	G	1536	C	1537	U	1538	G	1540	*	C	1571	G	1572	A	1573	G	1574	cWW	csS	tHW		cWW			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CACUGCGUGCUGGCGAG	2
CACUGCGUGAUGGCGAG	1
CAAUGCGUAGUCCGUCG	1
CAAUGCCCAGUUCGCCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
ACUGUGCUGGA	2
ACUGUGAUGGA	1
AAUGUAGUCUC	1
AAUCCAGUUCC	1

Release history

Release	4.0	4.1	4.2	4.3	4.4	4.5
Date	2025-08-13	2025-09-10	2025-10-08	2025-11-05	2025-12-03	2025-12-31
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
Heat map statistics: Min 0.10 | Avg 0.16 | Max 0.30

Help

Coloring options: Nucleotide numbers

Copyright 2026 BGSU RNA group. Page generated in 0.2597 s