Motif J3_10154.1 Version J3_10154.1 of this group appears in releases 3.80 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-11 | 5-6 | 8-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5TBW_008 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | U | 1479 | G | 1480 | A | 1481 | G | 1483 | G | 1485 | * | C | 1857 | A | 1858 | A | 1859 | * | U | 1871 | C | 1872 | U | 1873 | A | 1874 | cWW | tSH | tHW | tWW | cWW | cWW | |
| 2 | J3_8C3A_006 | 8C3A | 0.0823 | 2 | 1 | LSU rRNA | U | 1475 | G | 1476 | A | 1477 | G | 1479 | G | 1481 | * | C | 1853 | A | 1854 | A | 1855 | * | U | 1867 | C | 1868 | U | 1869 | A | 1870 | cWW | tSH | tHW | tWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGUG*CAA*UCUA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGU*A*CU | 2 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tSH-tWW-tHW-cWW-F-cWW-F
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: