Motif J3_11375.2 Version J3_11375.2 of this group appears in releases 3.89 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 2-3 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_1E8O_001 | 1E8O | 0.2468 | 0 | E | 7SL RNA | C | 103 | G | 104 | * | U | 123 | G | 124 | U | 125 | A | 126 | G | 127 | U | 128 | * | A | 143 | G | 144 | cWW | cWW | cWW |
| 2 | J3_4UYK_002 | 4UYK | 0.0000 | 0 | R | SRP RNA | C | 16 | G | 17 | * | U | 35 | G | 36 | U | 37 | A | 38 | A | 39 | C | 40 | * | G | 61 | G | 62 | cWW | cWW | cWW |
| 3 | J3_5AOX_001 | 5AOX | 0.3720 | 0 | C | ALU JO CONSENSUS RNA | C | 4 | G | 5 | * | U | 24 | G | 25 | U | 26 | A | 27 | A | 28 | U | 29 | * | A | 44 | G | 45 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGUAGU*AG | 1 |
| CG*UGUAAC*GG | 1 |
| CG*UGUAAU*AG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GUAA* | 2 |
| *GUAG* | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Heat map statistics
- Min 0.25 | Avg 0.23 | Max 0.42
Coloring options: