Motif J3_11934.4 Version J3_11934.4 of this group appears in releases 3.96 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-13 | 2-3 | 8-12 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_1G1X_002 | 1G1X | 0.1197 | 1 | D+E | 16S RIBOSOMAL RNA | U | 672 | G | 673 | * | C | 717 | G | 718 | C | 719 | C | 720 | G | 721 | A | 722 | G | 724 | G | 725 | * | C | 732 | A | 733 | G | 734 | cWW | cWW | tWW | cWW |
| 2 | J3_1G1X_004 | 1G1X | 0.1007 | 1 | I+J | 16S RIBOSOMAL RNA | U | 672 | G | 673 | * | C | 717 | G | 718 | C | 719 | C | 720 | G | 721 | A | 722 | G | 724 | G | 725 | * | C | 732 | A | 733 | G | 734 | cWW | cWW | tWW | cWW |
| 3 | J3_4LFB_012 | 4LFB | 0.0000 | 1 | A | SSU rRNA | U | 672 | G | 673 | * | C | 717 | G | 718 | C | 719 | C | 720 | G | 721 | A | 722 | G | 724 | G | 725 | * | C | 732 | A | 733 | G | 734 | cWW | cWW | tWW | cWW |
| 4 | J3_5J7L_003 | 5J7L | 0.0921 | 1 | AA | SSU rRNA | U | 672 | A | 673 | * | U | 717 | A | 718 | C | 719 | C | 720 | G | 721 | G | 722 | G | 724 | G | 725 | * | C | 732 | G | 733 | G | 734 | cWW | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CGCCGAUGG*CAG | 3 |
| UA*UACCGGUGG*CGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GCCGAUG*A | 3 |
| *ACCGGUG*G | 1 |
Release history
| Release | 3.96 |
|---|---|
| Date | 2025-04-23 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.09 | Max 0.15
Coloring options: