#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10break 11 12 13 141-142-133-103-115-86-79-1210-11
1 J3_4W90_0014W900.08410C cyclic di-AMP riboswitchU62G63A64A65U66C67*G76U77A78G79*C90G91A92A93cWWtSHcSscWwcWWtHScWW
2 J3_4QK9_0014QK90.00000AC-di-AMP riboswitchU47G48A49A50U51C52*G65U66A67G68*C87G88A89A90cWWtSHcSsntSscWwcWWtHScWW
3 J3_4QLM_0014QLM0.08590A cyclic di-AMP riboswitchC43G44A45A46U47C48*G65U66A67G68*C85G86A87G88cWWtSHcSscWwcWWtHScWW
4 J3_6N5P_0026N5P0.12470A cyclic di-AMP riboswitchU48U49A50A51U52C53*G69U70A71G72*C88G89C90A91cWWntSHcSsntSscWwcWWtHScWW
5 J3_6N5P_0016N5P0.16580A cyclic di-AMP riboswitchC7G8A9A10U11C12*G24U25A26C27*G108G109A110G111cWWtSHcSstSscWwcWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGAAUC*GUAG*CGAA2
CGAAUC*GUAG*CGAG1
UUAAUC*GUAG*CGCA1
CGAAUC*GUAC*GGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAU*UA*GA4
UAAU*UA*GC1

Release history

Release3.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.88
Date2019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-11
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Basepair signature
    cWW-tSH-cSS-tHS-F-cWW-cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.10 | Max 0.17
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