Motif J3_15893.1 Version J3_15893.1 of this group appears in releases 3.26 to 3.98

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3		4		5		6	break		7		8		9		10	break		11		12		13		14	1-14	2-13	3-10	3-11	5-8	6-7	9-12	10-11
1	J3_6N5P_001	6N5P	0.1658	0		A	C	7	G	8	A	9	A	10	U	11	C	12	*	G	24	U	25	A	26	C	27	*	G	108	G	109	A	110	G	111	cWW	tSH	cSs	tSs	cWw	cWW	tHS	cWW
2	J3_6N5P_002	6N5P	0.1247	0		A	U	48	U	49	A	50	A	51	U	52	C	53	*	G	69	U	70	A	71	G	72	*	C	88	G	89	C	90	A	91	cWW	ntSH	cSs	ntSs	cWw	cWW	tHS	cWW
3	J3_4QLM_001	4QLM	0.0859	0	C-di-AMP riboswitch	A	C	43	G	44	A	45	A	46	U	47	C	48	*	G	65	U	66	A	67	G	68	*	C	85	G	86	A	87	G	88	cWW	tSH	cSs		cWw	cWW	tHS	cWW
4	J3_4QK9_001	4QK9	0.0000	0	C-di-AMP riboswitch	A	U	47	G	48	A	49	A	50	U	51	C	52	*	G	65	U	66	A	67	G	68	*	C	87	G	88	A	89	A	90	cWW	tSH	cSs	ntSs	cWw	cWW	tHS	cWW
5	J3_4W90_001	4W90	0.0841	0	C-di-AMP riboswitch	C	U	62	G	63	A	64	A	65	U	66	C	67	*	G	76	U	77	A	78	G	79	*	C	90	G	91	A	92	A	93	cWW	tSH	cSs		cWw	cWW	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGAAUCGUAGCGAA	2
CGAAUCGUACGGAG	1
UUAAUCGUAGCGCA	1
CGAAUCGUAGCGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAUUAGA	4
UAAUUAGC	1

Release history

Release	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79	3.80	3.81	3.82	3.83	3.84	3.85	3.86	3.87	3.88	3.89	3.90	3.91	3.92	3.93	3.94	3.95	3.96	3.97	3.98
Date	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03	2024-01-03	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17	2024-08-14	2024-09-11	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26	2025-04-23	2025-05-21	2025-06-18
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: C-di-AMP riboswitch (3)
(2)
Basepair signature: cWW-tSH-cSS-tHS-F-cWW-cWW-cWW
Heat map statistics: Min 0.08 | Avg 0.10 | Max 0.17

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Coloring options: Nucleotide numbers

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