Motif J3_17385.4 Version J3_17385.4 of this group appears in releases 3.96 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 1-12 | 3-4 | 5-10 | 6-9 | 6-11 | 7-8 | 9-10 | 9-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_1KUQ_002 | 1KUQ | 0.1080 | 1 | B | 16S RIBOSOMAL RNA FRAGMENT | C | 4 | G | 5 | G | 6 | * | C | 15 | U | 16 | G | 18 | A | 19 | * | U | 50 | G | 51 | A | 52 | C | 53 | G | 54 | cWW | cWW | tWH | tHS | cWW | cWW | ncSH | |
| 2 | J3_4LFB_015 | 4LFB | 0.0877 | 1 | A | SSU rRNA | C | 586 | G | 587 | G | 588 | * | C | 651 | U | 652 | G | 654 | A | 655 | * | U | 751 | G | 752 | A | 753 | C | 754 | G | 755 | cWW | cWW | tWH | tHS | cWW | cWW | ||
| 3 | J3_5J7L_051 | 5J7L | 0.0000 | 1 | AA | SSU rRNA | C | 586 | G | 587 | G | 588 | * | C | 651 | U | 652 | G | 654 | A | 655 | * | U | 751 | G | 752 | A | 753 | C | 754 | G | 755 | cWW | cWW | tWH | tHS | cWW | cWW | ncSH | |
| 4 | J3_1G1X_005 | 1G1X | 0.1433 | 1 | D+E | 16S RIBOSOMAL RNA | C | 586 | G | 587 | G | 588 | * | C | 651 | U | 652 | G | 654 | A | 655 | * | U | 751 | G | 752 | A | 753 | C | 754 | G | 755 | cWW | cWW | tWH | tHS | cWW | cWW | ncSH | |
| 5 | J3_8P9A_072 | 8P9A | 0.4493 | 2 | sR | SSU rRNA | U | 633 | G | 634 | A | 635 | * | U | 861 | A | 862 | A | 865 | G | 866 | * | C | 962 | A | 963 | U | 964 | U | 965 | A | 966 | cWW | cWW | cWW | cWW | ncSH | |||
| 6 | J3_8CRE_074 | 8CRE | 0.4844 | 2 | CM | SSU rRNA | U | 631 | G | 632 | A | 633 | * | U | 846 | A | 847 | A | 850 | G | 851 | * | C | 947 | A | 948 | U | 949 | U | 950 | A | 951 | cWW | cWW | ntWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGG*CUAGA*UGACG | 3 |
| UGA*UAAUAG*CAUUA | 2 |
| CGG*CUUGA*UGACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*UAG*GAC | 3 |
| G*AAUA*AUU | 2 |
| G*UUG*GAC | 1 |
Release history
| Release | 3.96 |
|---|---|
| Date | 2025-04-23 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.27 | Max 0.53
Coloring options: