Motif J3_17791.1 Version J3_17791.1 of this group appears in releases 3.88 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 1-19 | 3-4 | 5-15 | 6-14 | 7-17 | 8-10 | 9-12 | 9-18 | 10-11 | 12-18 | 13-17 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_6CZR_025 | 6CZR | 0.1693 | 1 | 1a | C | 1099 | G | 1100 | C | 1101 | * | G | 1138 | G | 1139 | A | 1140 | C | 1141 | U | 1142 | G | 1143 | C | 1144 | * | G | 1157 | A | 1158 | G | 1159 | G | 1160 | A | 1161 | A | 1162 | G | 1163 | G | 1164 | G | 1166 | cWW | cWW | tWS | ncSH | cHW | cWW | tWH | ||||
| 2 | J3_4LFB_018 | 4LFB | 0.0000 | 1 | A | C | 1116 | G | 1117 | C | 1118 | * | G | 1155 | G | 1156 | A | 1157 | C | 1158 | U | 1159 | G | 1160 | C | 1161 | * | G | 1175 | A | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | G | 1181 | G | 1182 | G | 1184 | cWW | cWW | tSW | tWS | cWW | cSH | cWW | cHW | cWW | ncHH | ntWH |
| 3 | J3_5J7L_054 | 5J7L | 0.1061 | 1 | AA | U | 1116 | A | 1117 | U | 1118 | * | A | 1155 | G | 1156 | A | 1157 | C | 1158 | U | 1159 | G | 1160 | C | 1161 | * | G | 1175 | A | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | G | 1181 | G | 1182 | G | 1184 | cWW | cWW | tSW | tWS | cWW | cSH | cWW | cHW | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGC*GGACUGC*GAGGAAGGAG | 2 |
| UAU*AGACUGC*GAGGAAGGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GACUG*AGGAAGGA | 2 |
| A*GACUG*AGGAAGGU | 1 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Heat map statistics
- Min 0.11 | Avg 0.10 | Max 0.20
Coloring options: