Motif J3_17791.1 Version J3_17791.1 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 1-19 | 2-8 | 2-18 | 3-7 | 4-15 | 5-14 | 7-16 | 8-18 | 9-10 | 12-13 | 17-19 | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_5J7L_054 | 5J7L | 0.1061 | 1 | AA | SSU rRNA | G | 1175 | A | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | G | 1181 | G | 1182 | G | 1184 | * | U | 1116 | A | 1117 | U | 1118 | * | A | 1155 | G | 1156 | A | 1157 | C | 1158 | U | 1159 | G | 1160 | C | 1161 | cWW | cWW | tWH | tSW | tWS | cWW | cWH | cWW | cWW | cSH | |
2 | J3_4LFB_018 | 4LFB | 0.0000 | 1 | A | SSU rRNA | G | 1175 | A | 1176 | G | 1177 | G | 1178 | A | 1179 | A | 1180 | G | 1181 | G | 1182 | G | 1184 | * | C | 1116 | G | 1117 | C | 1118 | * | G | 1155 | G | 1156 | A | 1157 | C | 1158 | U | 1159 | G | 1160 | C | 1161 | cWW | ncHH | cWW | ntWH | tSW | tWS | cWW | cWH | cWW | cWW | cSH |
3 | J3_6CZR_025 | 6CZR | 0.1693 | 1 | 1a | SSU rRNA | G | 1157 | A | 1158 | G | 1159 | G | 1160 | A | 1161 | A | 1162 | G | 1163 | G | 1164 | G | 1166 | * | C | 1099 | G | 1100 | C | 1101 | * | G | 1138 | G | 1139 | A | 1140 | C | 1141 | U | 1142 | G | 1143 | C | 1144 | cWW | tWH | tSW | cWH | cWW | cWW | ncSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGC*GGACUGC*GAGGAAGGAG | 2 |
UAU*AGACUGC*GAGGAAGGUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*GACUG*AGGAAGGA | 2 |
A*GACUG*AGGAAGGU | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Heat map statistics
- Min 0.11 | Avg 0.10 | Max 0.20
Coloring options: